[adegenet-forum] removing groups of individuals from genind object

Mark Coulson coulsonmw at gmail.com
Wed Dec 3 14:53:57 CET 2014


This is probably quite simple, but I have done a DAPC on a large number of
samples (~300) and have found quite good separation between samples from a
couple of very unique sites and the rest of the dataset. I'd like to now
run another DAPC on just the remaining samples (i.e. kick out the most
distinct groups) and am wondering how to easiest remove whole samples of
individuals from the genind file (say pop70-pop100), rather than having to
make a separate input file. I think I could do this with a normal dataframe
but not sure about a genind object??

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