[adegenet-forum] DAPC scatter plot and individual colour by population

[Jombart, Thibaut]

Hi there, 

simple, just replace grp$grp with the grouping of individuals you want to use for the plot. 

This said, be aware that the analysis is no longer optimal in terms of group discrimination.

Best
Thibaut


==============================
Dr Thibaut Jombart
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - School of Public Health
Norfolk Place, London W2 1PG, UK
Tel. : 0044 (0)20 7594 3658
http://sites.google.com/site/thibautjombart/
http://sites.google.com/site/therepiproject/
http://adegenet.r-forge.r-project.org/
Twitter: @thibautjombart
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Nicolas Dussex [nicolas.dussex at gmail.com]
Sent: 07 August 2014 02:15
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] DAPC scatter plot and individual colour by    population

Hi,

I built a DAPC scatter plot without using a priori grouping information (i.e. geographically distinct populations) using this simple command line: dapc1 <- dapc(data, grp$grp).

I obtained three distinct cluster but now I was wondering how I could  represent each individual with a colour corresponding to their sampling origin rather than to their inferred cluster.

I couldn't find this information on the manual and was hoping I could get some advice on that.

Thanks for your help!
Nic
--
Nic Dussex PhD
Department of Zoology
University of Otago
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