[adegenet-forum] Fwd: Help: incorporating SPCA results on a map

[Jombart, Thibaut]

Hello, 

please also check the sPCA tutorial for other plotting options. See section 'documents' on:
http://adegenet.r-forge.r-project.org/

or the corresponding vignette.

Cheers
Thibaut



________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Roy Mathew Francis [RoyFrancis.Mathew at agrsci.dk]
Sent: 04 December 2013 08:49
To: Emmanuel Wicker; adegenet-forum at lists.r-forge.r-project.org
Subject: Re: [adegenet-forum] Fwd: Help: incorporating SPCA results on a map

To overplot the sPCA results on to a map, use s.value().

Regards
Roy Mathew Francis
From: adegenet-forum-bounces at lists.r-forge.r-project.org [mailto:adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of Emmanuel Wicker
Sent: 04 December 2013 07:56
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] Fwd: Help: incorporating SPCA results on a map


-------- Message original --------
Sujet:

Help: incorporating SPCA results on a map

Date :

Thu, 28 Nov 2013 09:50:00 +0400

De :

Emmanuel Wicker <emmanuel.wicker at cirad.fr><mailto:emmanuel.wicker at cirad.fr>

Organisation :

CIRAD-UMR PVBMT

Pour :

adegenet-forum-request at lists.r-forge.r-project.org<mailto:adegenet-forum-request at lists.r-forge.r-project.org>



Dear adegenet users

I am relatively new in using ADEGENET, especially sPCA. I would like to

draw my SPCA output results on a map ("map" object), that I successfully

imported in the genind file.

The command plot.spca works, but I don't know to which argument  I

should affect the map.

Thank you in advance for your help

Manu



--

Emmanuel WICKER, PhD

Phytopathologiste / Plant Pathologist

CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical

Pôle de Protection des Plantes

7, chemin de l'IRAT

F-97410 Saint Pierre

La Réunion, France

wicker at cirad.fr<mailto:wicker at cirad.fr>

http://umr-pvbmt.cirad.fr/

Tel : 0262 49 92 42

fax : 0262 49 92 93



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