[adegenet-forum] genind object to data format for ade4 AMOVA

[Jombart, Thibaut]

Dear Vinson, 

there is no conversion to the ade4 format as all the 'genetics' material in ade4 is deprecated. 

Please consider using the function 'amova' from the pegas package, which is a better implementation of the method.

Cheers

Thibaut

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Dr Thibaut JOMBART
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - School of Public Health
St Mary’s Campus
Norfolk Place
London W2 1PG
United Kingdom
Tel. : 0044 (0)20 7594 3658
t.jombart at imperial.ac.uk
http://sites.google.com/site/thibautjombart/
http://adegenet.r-forge.r-project.org/
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Vinson Doyle [sonofvin at gmail.com]
Sent: 06 May 2012 00:22
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] genind object to data format for ade4 AMOVA

I would like to convert a genind object to the format used by ade4 for an AMOVA.  An example of the data format can be seen by:
library(ade4)
humDNAm

Thanks,
Vinson