[adegenet-forum] x <- new("genlight"....) hangs

[Jombart, Thibaut]

Hello, 

I have re-run the example you mention 10 times without problem. The behaviour of the function is not supposed to be stochastic. One thing might be that in some occasions you run out of RAM and thus the procedure takes ages to run.

Otherwise I would need a reproducible example to figure out if there is something wrong.

All the best

Thibaut
________________________________________
From: adegenet-forum-bounces at r-forge.wu-wien.ac.at [adegenet-forum-bounces at r-forge.wu-wien.ac.at] on behalf of David Wragg [plxdw1 at nottingham.ac.uk]
Sent: 18 January 2012 16:18
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] x <- new("genlight"....) hangs

I’m having issues with the genlight class. Essentially the problem happens when I try and create new object containing data – this can be fabricated data as in one forum example (http://lists.r-forge.r-project.org/pipermail/adegenet-forum/2011-September/000404.html) or it can be my own data. Sometimes the command works, at other times it simply hangs and nothing happens. I’ve tried this with multicore set to TRUE and again set to FALSE. The data is in the correct format as it has worked previously.

Can you offer any advice?

Cheers

Dave



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