[adegenet-forum] Convert VCF file into genlight

[Jombart, Thibaut]

Hello, 

if you can use PLINK to convert VCF files to PLINK's raw format, then you can use read.PLINK to generate a genlight.

Cheers

Thibaut
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Linda Rutledge [lrutledge at trentu.ca]
Sent: 07 December 2012 18:32
To: adegenet-forum at r-forge.wu-wien.ac.at
Subject: [adegenet-forum] Convert VCF file into genlight

Hi

Is there an easy way to convert VCF files of SNPs into genlight format for analysis with adegenet? Thanks.


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