[adegenet-forum] BIC for arbitrary K

[Jombart, Thibaut]

Hello, 

if you have pre-defined clusters, then find.clusters won't help you. Look at the AMOVA implemented in Pegas, which should help. I am not sure if you can extract AIC from the models, but it is worth a try.

Cheers

Thibaut
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Stefan Prost [stefan.prost at anatomy.otago.ac.nz]
Sent: 05 December 2012 13:31
To: adegenet-forum at r-forge.wu-wien.ac.at
Subject: [adegenet-forum] BIC for arbitrary K

Hi,

 How can you compare two or more clusters, which are based on geography
rather than the genetic signal against each other?

E.g. East-West (K=2) vs. East-Middle-West (K=3)?

Thanks!

Cheers,
Stefan

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