[adegenet-forum] input file problem!
AVIK RAY
avik.ray.kol at gmail.com
Thu Jun 9 10:54:57 CEST 2011
Hi All
I am trying to do PCA with tetraploid data; 204 individuals, 7 loci,
with some missing data, and the command goes like this
..........
> obj<-read.table("infileAll.txt")
> obj
................
................
> dat<-data.frame(obj)
> dat
................
................
> x<-df2genind(dat, sep="/", ploidy=4)
Error in data.frame(c("366", "366", "366", "378"), c("366", "366", "366",:
arguments imply differing number of rows: 4, 1, 3
In addition: Warning message:
In df2genind(dat, sep = "/", ploidy = 4) :
entirely non-type individual(s) deleted
......................
so, do not know what is going wrong in it! I guess there is some problem
with the input file so it's not accepted in R; earlier with small
dataset it worked fine;
please suggest a solution
Thanks
AVIK
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