[adegenet-forum] sPCA with sequence data

Jombart, Thibaut t.jombart at imperial.ac.uk
Fri Mar 26 14:55:23 CET 2010


Hello Sofie, 

yes, it is possible, using ape and adegenet packages. You can read your DNA alignments using ape's read.dna, and then extract SNPs from the alignments to create a genind object using DNAbin2genind.



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