[adegenet-forum] lost in the manual

[Jombart, Thibaut]

Dear Marina, 

I'm sorry to hear that you are struggling with the adegenet manual - it was not meant to induce such a large amount of pain in the first place, although I seem to understand this is an occasional side-effect. 

The package is already provided with some sample input files. These files usually have one of the following format: GENETIX (.gtx), Fstat (.dat) STRUCTURE, (.str) and genepop (.gen). These files are stored in the .../library/adegenet/files directory of your R installation. They are called upon by the function read.genetix, read.fstat, read.structure, etc. (see ?read.genetix).

Anyway, all the instructions of the manual are meant to be reproducible as long as you've got the package properly installed. If you have specific troubles with the manual, I'd be happy to help.

Best regards and happy new year.

Thibaut. 

-- 
######################################
Dr Thibaut JOMBART
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - Faculty of Medicine
St Mary’s Campus
Norfolk Place
London W2 1PG
United Kingdom
Tel. : 0044 (0)20 7594 3658
t.jombart at imperial.ac.uk
http://www1.imperial.ac.uk/medicine/people/t.jombart/
http://adegenet.r-forge.r-project.org/

 
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of mchiappero at efn.uncor.edu [mchiappero at efn.uncor.edu]
Sent: 28 December 2009 13:24
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] lost in the manual

 Hello!

I´m trying to learn how to use Adegenet. I have a basic knowledge of R, but I feel so lost in the Adegenet manual... I need a lot of help, please!
The first thing would be to have an input file to exercise: can anyone provide me a simple input matrix as an example? Maybe it would help me to understand the instructions in the manual.
Thank you!
Marina

_________________________________________________________
Marina B. Chiappero
Genética de Poblaciones y Evolución
Facultad de Ciencias Exactas, Físicas y Naturales
Universidad Nacional de Córdoba
Av. Velez Sarsfield 299
(5000) Córdoba. Argentina
______________________________________________________________


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