[adegenet-forum] mtDNA

[Jombart, Thibaut]

Dear Consuelo, 

you can convert DNA sequences to SNPs using DNAbin2genind (see corresponding manpage and tutorial online). Population information can be provided using 'pop' or in DNAbin2genind.

Best

Thibaut
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of Consuelo Hermosilla [cheluna at gmail.com]
Sent: 03 August 2010 12:11
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] mtDNA

Dear Thibaut,

I have a question related to mtDNA. I've been able to import my data, using ape and read.dna(). It is a fasta file. My doubt is, how can I add the population information now?

Thank you very much!!

Consuelo

-------------
Consuelo Hermosilla
PhD student
Departamento de Ecología y Biología Animal
Departamento de Bioquímica, Genética e Inmunología, Área de Genética
Facultad de Ciencias del Mar
Campus de As Lagoas-Marcosende
Universidad de Vigo
36310 Vigo
SPAIN
Mobile: +34 692 633 298

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