[adegenet-commits] r1212 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Jul 30 21:40:53 CEST 2015
Author: jombart
Date: 2015-07-30 21:40:53 +0200 (Thu, 30 Jul 2015)
New Revision: 1212
Modified:
www/documentation.html
Log:
updating website for new workshop
Modified: www/documentation.html
===================================================================
--- www/documentation.html 2015-07-30 19:34:13 UTC (rev 1211)
+++ www/documentation.html 2015-07-30 19:40:53 UTC (rev 1212)
@@ -80,6 +80,7 @@
+
engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
</span><br style="font-family: Helvetica,Arial,sans-serif;">
<br style="font-family: Helvetica,Arial,sans-serif;">
@@ -100,11 +101,13 @@
<br style="font-family: Helvetica,Arial,sans-serif;">
<br style="font-family: Helvetica,Arial,sans-serif;">
<span style="color: rgb(0, 102, 0); font-weight: bold;
- font-family: Helvetica,Arial,sans-serif;">Tutorials*</span><br>
+ font-family: Helvetica,Arial,sans-serif;">Tutorials*</span> <img
+ alt="new" src="images/new.png" height="37" width="80"><br>
<font face="Helvetica, Arial, sans-serif">Up-to-date tutorials are
now hosted on Github:<br>
<a target="_top"
href="https://github.com/thibautjombart/adegenet/wiki/Tutorials">https://github.com/thibautjombart/adegenet/wiki/Tutorials</a>
+
</font><br>
<span style="font-weight: bold; color: rgb(0, 102, 0);
font-family: Helvetica,Arial,sans-serif;"><br>
@@ -203,6 +206,7 @@
+
Epidemiology</span> / <i>Public Health</i>: <span
style="font-weight: bold;">Introduction to phylogenetics</span>
(last updated on the 15/13/2013)</li>
@@ -253,6 +257,7 @@
+
Epidemiology</span> / <i>Public Health</i>: <span
style="font-weight: bold;">Introduction to multivariate
analysis / bacterial GWAS</span> (last updated on the
@@ -261,6 +266,7 @@
<li><a href="files/simGWAS/lecture-MSc-MVA.1.2.pdf">lecture</a></li>
<li><a href="files/simGWAS/MSc-GWAS-1.1.pdf">practical</a></li>
<li>data (<a href="files/simGWAS/simGWAS.RData">simGWAS.RData</a>)<br>
+ <br>
</li>
</ul>
</ul>
@@ -298,6 +304,7 @@
+
</b><b><i>outbreaker</i></b></li>
<ul>
<li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -330,6 +337,7 @@
+
analysis using <span style="font-style: italic;">ape,
adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
<ul>
@@ -338,6 +346,7 @@
<li>data (<a href="files/fakeOutbreak/cases.csv">cases.csv</a>,
<a href="files/fakeOutbreak/alignment.fa">alignment.fa</a>,
<a href="files/fakeOutbreak/update.csv">update.csv</a>)<br>
+ <br>
</li>
</ul>
</ul>
@@ -360,6 +369,7 @@
href="files/montpellier/lecture-MVAspatial.1.0.pdf">lecture</a>,
<a href="files/montpellier/practical-MVAspatial.1.0.pdf">practical</a>]<br>
<br>
+ <br>
</li>
</ul>
<li>XXIV International Symposium of Statistics, Bogota, Colombia
@@ -368,46 +378,105 @@
<ul>
<li><a href="files/lectureBogota2014-MVA.1.1.pdf">slides</a>
of the lecture<br>
+ </li>
+ <li>Workshop "<span style="font-weight: bold;">Genetic data
+ analysis using R</span>" - Leuven (October 2014)</li>
+ <li>Short R refresher [<a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/Refresh-R.pdf">lecture</a>]<br>
+ </li>
+ <li>Introduction to phylogenetics [<a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-phylo.1.3.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-introphylo.1.1.pdf">practical</a>]
+ </li>
+ <li>Multivariate analysis of genetic data: an introduction [<a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-MVA.1.1.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAintro.1.0.pdf">practical</a>]
+ </li>
+ <li>Multivariate analysis of genetic data: exploring group
+ diversity [<a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-MVAgroups.1.1.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAgroups.1.2.pdf">practical</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf">practical
+
+
+
+
+ all commands</a>]</li>
+ <li>An introduction to Genome Wise Association Studies (GWAS)
+ [<a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/Lecture-Day4-%20Genome-Wide%20Association%20Studies.pptx">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-GWAS.pdf">practical</a>]</li>
+ <li>Multivariate analysis of genetic data: uncovering spatial
+ structures [<a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-MVAspatial.1.1.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAspatial.1.0.pdf">practical</a>]<br>
<br>
</li>
</ul>
+ </ul>
+ <ul style="font-family: Helvetica,Arial,sans-serif;">
<li>Workshop "<span style="font-weight: bold;">Genetic data
- analysis using R</span>" - Leuven (October 2014) <img
- alt="" src="images/new.png" height="37" width="80"></li>
+ analysis using R</span>" - Leuven (October 2014)</li>
<ul>
<li>Short R refresher [<a
- href="files/Leuven2014/Refresh-R.pdf">lecture</a>]<br>
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/Refresh-R.pdf">lecture</a>]<br>
</li>
<li>Introduction to phylogenetics [<a
- href="files/Leuven2014/lecture-phylo.1.3.pdf">lecture</a>,
- <a href="files/Leuven2014/practical-introphylo.1.1.pdf">practical</a>]
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-phylo.1.3.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-introphylo.1.1.pdf">practical</a>]
</li>
<li>Multivariate analysis of genetic data: an introduction [<a
- href="files/Leuven2014/lecture-MVA.1.1.pdf">lecture</a>, <a
- href="files/Leuven2014/practical-MVAintro.1.0.pdf">practical</a>]
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-MVA.1.1.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAintro.1.0.pdf">practical</a>]
</li>
<li>Multivariate analysis of genetic data: exploring group
diversity [<a
- href="files/Leuven2014/lecture-MVAgroups.1.1.pdf">lecture</a>,
- <a href="files/Leuven2014/practical-MVAgroups.1.2.pdf">practical</a>,
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-MVAgroups.1.1.pdf">lecture</a>,
<a
- href="files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf">practical
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAgroups.1.2.pdf">practical</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf">practical
+
all commands</a>]</li>
<li>An introduction to Genome Wise Association Studies (GWAS)
[<a
-href="files/Leuven2014/Lecture-Day4-%20Genome-Wide%20Association%20Studies.pptx">lecture</a>,
- <a href="files/Leuven2014/practical-GWAS.pdf">practical</a>]</li>
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/Lecture-Day4-%20Genome-Wide%20Association%20Studies.pptx">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-GWAS.pdf">practical</a>]</li>
<li>Multivariate analysis of genetic data: uncovering spatial
structures [<a
- href="files/Leuven2014/lecture-MVAspatial.1.1.pdf">lecture</a>,
- <a href="files/Leuven2014/practical-MVAspatial.1.0.pdf">practical</a>]<br>
- <br>
- </li>
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/lecture-MVAspatial.1.1.pdf">lecture</a>,
+ <a
+href="file:///home/thibaut/dev/adegenet/www/files/Leuven2014/practical-MVAspatial.1.0.pdf">practical</a>]</li>
</ul>
+ </ul>
+ <ul style="font-family: Helvetica,Arial,sans-serif;">
+ <li>Workshop "<span style="font-weight: bold;">Genetic data
+ analysis with R</span>" - Glasgow (August 2015) <img
+ alt="new" src="images/new.png" height="37" width="80"></li>
<ul>
+ <li>Short R refresher [lecture]<br>
+ </li>
+ <li>Introduction to phylogenetics [lecture, practical] </li>
+ <li>Multivariate analysis of genetic data: an introduction [lecture,
+ practical] </li>
+ <li>Multivariate analysis of genetic data: exploring group
+ diversity [lecture, practical]</li>
+ <li>An introduction to Genome Wise Association Studies (GWAS)
+ [lecture, practical]</li>
+ <li>Multivariate analysis of genetic data: uncovering spatial
+ structures [lecture, practical]</li>
</ul>
</ul>
<br style="font-family: Helvetica,Arial,sans-serif;">
@@ -447,21 +516,7 @@
style="font-family: Helvetica,Arial,sans-serif;">
<br style="font-family: Helvetica,Arial,sans-serif;">
<br style="font-family: Helvetica,Arial,sans-serif;">
- <span style="font-weight: bold; color: rgb(0, 102, 0);
- font-family: Helvetica,Arial,sans-serif;">Miscellaneous<br>
- </span><span style="font-family: Helvetica,Arial,sans-serif;">- </span><a
- style="font-family: Helvetica,Arial,sans-serif;"
- href="files/worksOnlyInDiploids.txt">worksOnyInDiploids.txt</a><span
- style="font-family: Helvetica,Arial,sans-serif;">: the list of </span><span
- style="font-weight: bold; font-family:
- Helvetica,Arial,sans-serif;">functions</span><span
- style="font-family: Helvetica,Arial,sans-serif;"> working </span><span
- style="font-weight: bold; font-family:
- Helvetica,Arial,sans-serif;">only for diploid</span><span
- style="font-family: Helvetica,Arial,sans-serif;"> genotypes </span><br
- style="font-family: Helvetica,Arial,sans-serif;">
<br style="font-family: Helvetica,Arial,sans-serif;">
- <br style="font-family: Helvetica,Arial,sans-serif;">
<span style="font-weight: bold; color: rgb(0, 102, 0);
font-family: Helvetica,Arial,sans-serif;"></span><br
style="font-family: Helvetica,Arial,sans-serif;">
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