[adegenet-commits] r1217 - in www: . files/Glasgow2015

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2015-08-06 10:46:35 +0200 (Thu, 06 Aug 2015)
New Revision: 1217

Added:
   www/files/Glasgow2015/PRESENTATION- Genome-Wide Association Studies.pdf
   www/files/Glasgow2015/practical-GWAS_day4.pdf
   www/files/Glasgow2015/simGWAS.Rdata
Modified:
   www/documentation.html
Log:
finally adding material for day4

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2015-08-04 21:47:50 UTC (rev 1216)
+++ www/documentation.html	2015-08-06 08:46:35 UTC (rev 1217)
@@ -85,6 +85,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -116,6 +117,7 @@
 
 
 
+
       </font><br>
       <span style="font-weight: bold; color: rgb(0, 102, 0);
         font-family: Helvetica,Arial,sans-serif;"><br>
@@ -219,6 +221,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -274,6 +277,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -325,6 +329,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -362,6 +367,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -438,6 +444,7 @@
 
 
 
+
               all commands</a>]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)
             [<a
@@ -456,8 +463,6 @@
             analysis with R</span>" - Glasgow (August 2015) <img
             alt="new" src="images/new.png" height="37" width="80"></li>
         <ul>
-          <li>Short R refresher [lecture]<br>
-          </li>
           <li>Introduction to phylogenetics [<a
               href="files/Glasgow2015/lecture-phylo.1.0.pdf">lecture</a>,
             <a href="files/Glasgow2015/practical-introphylo.1.0.pdf">practical</a>]
@@ -467,13 +472,18 @@
             <a href="files/Glasgow2015/practical-MVAintro.1.0.pdf">practical</a>,
             <a
               href="files/Glasgow2015/practical-MVAintro-allCmd.1.0.pdf">practical
+
               with all commands</a>] </li>
           <li>Multivariate analysis of genetic data: exploring group
             diversity [<a
               href="files/Glasgow2015/lecture-MVAgroups.1.0.pdf">lecture</a>,
             <a href="files/Glasgow2015/practical-MVAgroups.1.0.pdf">practical</a>]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)
-            [lecture, practical]</li>
+            [<a
+href="files/Glasgow2015/PRESENTATION-%20Genome-Wide%20Association%20Studies.pdf">lecture</a>,
+            <a href="files/Glasgow2015/practical-GWAS_day4.pdf">practical</a>,
+            <a href="files/Glasgow2015/simGWAS.Rdata">data</a>]<br>
+          </li>
           <li>Multivariate analysis of genetic data: uncovering spatial
             structures [<a
               href="files/Glasgow2015/lecture-MVAspatial.1.0.pdf">lecture</a>,

Added: www/files/Glasgow2015/PRESENTATION- Genome-Wide Association Studies.pdf
===================================================================
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+þÝ$I¹§n Ž›5nÑV¤;»I¢v»†„‡xª¦*MÚìqàl7IÒî”zíŠÞd²zq&YTnçL®ãÈŒbpÒöªþn’¤Üè_JØ]õ8¨:l6™Ê‚Û,i7­37 (êädͽ«ö³A’r·€lݏ³z‘äd­&òÃJ’n—„ÎõÞ©
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To get the complete diff run:
    svnlook diff /svnroot/adegenet -r 1217