[adegenet-commits] r1161 - in www: . files

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Tue Mar 18 20:02:13 CET 2014 

Author: jombart
Date: 2014-03-18 20:02:13 +0100 (Tue, 18 Mar 2014)
New Revision: 1161

Added:
   www/files/tutorial-dapc.pdf
Modified:
   www/documentation.html
Log:
added tuto on dapc

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-03-18 15:41:43 UTC (rev 1160)
+++ www/documentation.html	2014-03-18 19:02:13 UTC (rev 1161)
@@ -49,6 +49,7 @@
 
 
 
+
         engine</a>. <br>
       <br>
       <br>
@@ -60,6 +61,7 @@
 
 
 
+
       which compiles all the manpages of the package.<br>
       <br>
       <br>
@@ -71,8 +73,18 @@
           introduction to the package: data classes, inputs/outputs,
           basic population genetics, and exploratory analyses;
           accessible from R by typing <span style="font-family:
-            monospace; color: rgb(255, 0, 0);">adegenetTutorial("basics")</span>.</li>
+            monospace; color: rgb(255, 0, 0);">adegenetTutorial("basics")</span>.<img
+            alt="" src="images/new.png" height="37" width="80"></li>
         <li><a
+href="http://cran.r-project.org/web/packages/adegenet/vignettes/tutorial-dapc.pdf"><span
+              style="font-style: italic;">tutorial-dapc</span></a>:
+          a tutorial for the analysis of population diversity using
+          Discriminant Analysis of Principal Components (DAPC);
+          accessible from R by typing <span style="font-family:
+            monospace; color: rgb(255, 0, 0);"><span style="font-family:
+              monospace; color: rgb(255, 0, 0);">adegenetTutorial</span>("dapc")</span>.<img
+            alt="" src="images/new.png" height="37" width="80"></li>
+        <li><a
 href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-spca.pdf"><span
               style="font-style: italic;">adegenet-spca</span></a>:
           spatial multivariate analysis using adegenet; includes an
@@ -80,13 +92,6 @@
           typing <span style="font-family: monospace; color: rgb(255,
             0, 0);">vignette("adegenet-spca")</span>.</li>
         <li><a
-href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-dapc.pdf"><span
-              style="font-style: italic;">adegenet-dapc</span></a>:
-          analysis of the genetic structuring of populations; includes
-          an introduction to Discriminant Analysis of Principal
-          Components (DAPC); accessible from R by typing <span
-            style="font-family: monospace; color: rgb(255, 0, 0);">vignette("adegenet-dapc")</span>.</li>
-        <li><a
 href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-genomics.pdf"><span
               style="font-style: italic;">adegenet-genomics</span></a>:
           introduction to the handling of genome-wide SNP data using
@@ -132,6 +137,7 @@
 
 
 
+
         1</a> [<a href="files/practical-day1.1.2-allcmd.pdf">version
         with all commands</a>]<br>
           > <a href="files/practical-day2.1.3.pdf">practical
@@ -150,6 +156,7 @@
 
 
 
+
         2</a> [<a href="files/practical-day2.1.3-allcmd.pdf">version
         with all commands</a>]<br>
           > <a href="files/practical-day3.1.2.pdf">practical
@@ -168,6 +175,7 @@
 
 
 
+
         3</a><br>
       <br>
       - MRC methodological session: Introduction to phylogenetics:<br>
@@ -202,6 +210,7 @@
 
 
 
+
         Epidemiology</span> / <i>Public Health</i>: <span
         style="font-weight: bold;">Introduction to phylogenetics</span>.<br>
       (last updated on the 15/13/2013)<br>
@@ -224,6 +233,7 @@
 
 
 
+
         Epidemiology</span> / <i>Public Health</i>: <span
         style="font-weight: bold;">Introduction to multivariate analysis
         / bacterial GWAS</span>.<br>
@@ -244,6 +254,7 @@
 
 
 
+
       </b><b><i>outbreaker</i></b> <br>
           > <a href="files/GenEpiTalk.1.0.pdf">talk</a><br>
           > <a href="files/outbreakPractical.1.3.pdf">practical</a><br>
@@ -282,6 +293,7 @@
 
 
 
+
       <a href="files/hackLib/README">README</a> <br>
       <br>
       <br>

Added: www/files/tutorial-dapc.pdf
===================================================================
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+++ www/files/tutorial-dapc.pdf	2014-03-18 19:02:13 UTC (rev 1161)
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/adegenet -r 1161

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