[adegenet-commits] r1084 - www

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2013-03-12 18:26:46 +0100 (Tue, 12 Mar 2013)
New Revision: 1084

Modified:
   www/literature.html
Log:
+3 ref

Modified: www/literature.html
===================================================================
--- www/literature.html	2013-03-11 16:37:04 UTC (rev 1083)
+++ www/literature.html	2013-03-12 17:26:46 UTC (rev 1084)
@@ -55,6 +55,7 @@
 
 
 
+
         the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
       <br style="color: rgb(0, 153, 0);">
       <br>
@@ -79,6 +80,7 @@
 
 
 
+
         abstract</a>]<br>
       <br>
       - the paper presenting the <span style="font-style: italic;">spatial
@@ -88,6 +90,7 @@
 
 
 
+
         principal component analysis</span> (<span style="font-style:
         italic;">sPCA</span>, function <span style="font-family:
         monospace; color: rgb(255, 0, 0);">spca</span>), global and
@@ -100,6 +103,7 @@
 
 
 
+
       cryptic spatial patterns in genetic variability by a new
       multivariate method.  <span style="font-style: italic;">Heredity</span>
       <span style="font-weight: bold;">101</span>: 92-103. doi:
@@ -113,6 +117,7 @@
 
 
 
+
         abstract</a>]<br>
     </div>
     <br>
@@ -128,6 +133,7 @@
 
 
 
+
       simulations of genealoies of haplotypes (<span style="font-family:
         monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
       <b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
@@ -143,6 +149,7 @@
 
 
 
+
         of Principal Components</span> (<span style="font-style:
         italic;">DAPC</span>, functions <span style="font-family:
         monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
@@ -166,6 +173,7 @@
       M, Kempenaers B, Allainé D (2007) The<span style="color: rgb(0, 0,
         0);">genetic similarity between pair members influences the
         frequency of extrapair paternity in alpine marmots</span>. <i>Animal
+
         Behaviour</i><i></i><span style="font-weight: bold;">76</span>:
       87-95.<br>
       <br>
@@ -178,6 +186,7 @@
 
 
 
+
           Genomics</span></span><span class="citation-publication-date"></span><span
         style="font-weight: bold;" class="citation-volume">9</span><span
         class="citation-issue"></span>: 256.<br>
@@ -205,12 +214,14 @@
 
 
 
+
             marmota</span>.</span><span style="font-style: italic;">Molecular
 
 
 
 
 
+
           Ecology</span> <span style="font-weight: bold;">18</span>:
         1491-1503.<br>
         <br>
@@ -256,6 +267,7 @@
 
 
 
+
           australis</i> in North America. <span style="font-style:
           italic;">Biological Invasions</span>. doi:
         10.1007/s10530-010-9699-6.<br>
@@ -405,6 +417,7 @@
 
 
 
+
           Oct 6. [Epub ahead of print]<br>
         </p>
         <p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
@@ -415,6 +428,7 @@
 
 
 
+
             pityocampa</em>, Lepidoptera, Notodontidae). <span
             style="font-style: italic;">Journal of Evolutionary Biology</span>,
           no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
@@ -430,6 +444,7 @@
 
 
 
+
             Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
         <p class="intro">[26] <span class="citation_author">Vandewoestijne
 
@@ -438,6 +453,7 @@
 
 
 
+
             S, </span> <span class="citation_author">Van Dyck H, </span>
           <span class="citation_date">2010</span> <span
             class="citation_article_title">Population Genetic
@@ -449,6 +465,7 @@
 
 
 
+
             ONE</span><span class="citation_issue">5(11):</span> <span
             class="citation_start_page">e13810.</span> <span
             class="citation_doi">doi:10.1371/journal.pone.0013810<br>
@@ -471,6 +488,7 @@
 
 
 
+
           </span><span class="doi"><span class="label">DOI:</span> <span
               class="value">10.1007/s10329-010-0232-4<br>
             </span></span></p>
@@ -530,6 +548,7 @@
 
 
 
+
             tetradactylum</em>: Polynemidae). Molecular Ecology,
           20: no. doi: 10.1111/j.1365-294X.2011.05097.x<br>
         </p>
@@ -547,6 +566,7 @@
 
 
 
+
               neoformans</i> Variety <i>grubii</i> Multilocus Sequence
             Types from Thailand Are Consistent with an Ancestral African
             Origin.</span> <span class="citation_journal_title">PLoS
@@ -796,6 +816,7 @@
 
 
 
+
         10.1007/s10709-012-9640-2<br>
         <br>
         [76] Samantha Baldwin, Meeghan Pither-Joyce, Kathryn Wright,
@@ -1281,9 +1302,29 @@
         archive them in the Demiurge information system. Molecular
         Ecology Resources. doi: 10.1111/1755-0998.12084<br>
         <br>
+        [158]* Kato-Maeda M, Ho C, Passarelli B, Banaei N, Grinsdale J,
+        et al. (2013) Use of Whole Genome Sequencing to Determine the
+        Microevolution of Mycobacterium tuberculosis during an Outbreak.
+        PLoS ONE 8(3): e58235. doi:10.1371/journal.pone.0058235<br>
         <br>
+        [159]* Florent Tivet, Joao Carlos de Moraes S, Rattan Lal,
+        Clever Briedis, Paulo Rogerio Borszowskei, et al. (2013)
+        Aggregate C depletion by plowing and its restoration by diverse
+        biomass-C inputs under no-till in sub-tropical and tropical
+        regions of Brazil. Soil & Tillage Research 126 (2013)
+        203–218<br>
         <br>
+        [160] Fontaine et al. (2013) Genetic signature of a range
+        expansion and leap-frog event after the recent invasion of
+        Europe by the grapevine downy mildew pathogen <i>Plasmopara
+          viticola</i>. Molecular Ecology. doi: 10.1111/mec.12293<br>
         <br>
+        <br>
+        <br>
+        <br>
+        <br>
+        <br>
+        <br>
         <p></p>
         <p class="intro">* adegenet not or wrongly cited, but actually
           used in the paper. <br>