[adegenet-commits] r1081 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Mar 4 13:10:30 CET 2013
Author: jombart
Date: 2013-03-04 13:10:29 +0100 (Mon, 04 Mar 2013)
New Revision: 1081
Modified:
www/literature.html
Log:
+1ref
Modified: www/literature.html
===================================================================
--- www/literature.html 2013-03-03 18:43:05 UTC (rev 1080)
+++ www/literature.html 2013-03-04 12:10:29 UTC (rev 1081)
@@ -1,7 +1,7 @@
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
- <meta content="text/html; charset=ISO-8859-1"
+ <meta content="text/html; charset=windows-1252"
http-equiv="content-type">
<title>documentation</title>
<script type="text/javascript">
@@ -54,6 +54,7 @@
+
the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
<br style="color: rgb(0, 153, 0);">
<br>
@@ -77,6 +78,7 @@
+
abstract</a>]<br>
<br>
- the paper presenting the <span style="font-style: italic;">spatial
@@ -85,6 +87,7 @@
+
principal component analysis</span> (<span style="font-style:
italic;">sPCA</span>, function <span style="font-family:
monospace; color: rgb(255, 0, 0);">spca</span>), global and
@@ -96,6 +99,7 @@
+
cryptic spatial patterns in genetic variability by a new
multivariate method. <span style="font-style: italic;">Heredity</span>
<span style="font-weight: bold;">101</span>: 92-103. doi:
@@ -108,6 +112,7 @@
+
abstract</a>]<br>
</div>
<br>
@@ -122,6 +127,7 @@
+
simulations of genealoies of haplotypes (<span style="font-family:
monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
@@ -136,6 +142,7 @@
+
of Principal Components</span> (<span style="font-style:
italic;">DAPC</span>, functions <span style="font-family:
monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
@@ -156,11 +163,11 @@
adegenet:</span><br style="text-decoration: underline;">
<br>
[1] Cohas A, Yoccoz NG, Bonenfant C, Goossens B, Genton C, Galan
- M, Kempenaers B, Allainé D (2007) The<span style="color:
- rgb(0, 0, 0);">genetic similarity between pair members
- influences the frequency of extrapair paternity in alpine
- marmots</span>. <i>Animal Behaviour</i><i></i><span
- style="font-weight: bold;">76</span>: 87-95.<br>
+ M, Kempenaers B, Allainé D (2007) The<span style="color: rgb(0, 0,
+ 0);">genetic similarity between pair members influences the
+ frequency of extrapair paternity in alpine marmots</span>. <i>Animal
+ Behaviour</i><i></i><span style="font-weight: bold;">76</span>:
+ 87-95.<br>
<br>
[2] Satkoski JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi
VS, Smith DG (2008) Pyrosequencing as a method for SNP
@@ -170,6 +177,7 @@
+
Genomics</span></span><span class="citation-publication-date"></span><span
style="font-weight: bold;" class="citation-volume">9</span><span
class="citation-issue"></span>: 256.<br>
@@ -183,33 +191,31 @@
style="font-style: italic;">Int J Primatol</span> <span
style="font-weight: bold;">29</span>: 1295-1311.<br>
<br>
- [4] Kidd, AG, Bowman J, Lesbarrères D, Schulte-Hostedde
- AI (2009). Hybridization between escaped domestic and wild
- American mink (<span style="font-style: italic;">Neovison vison</span>).
-
-
-
-
+ [4] Kidd, AG, Bowman J, Lesbarrères D, Schulte-Hostedde AI
+ (2009). Hybridization between escaped domestic and wild American
+ mink (<span style="font-style: italic;">Neovison vison</span>).
<span style="font-style: italic;">Molecular Ecology</span> <span
style="font-weight: bold;">18</span>: 1175-1186.<br>
<br>
- [5] Cohas E, Bonenfant C, Kempaners B, Allainé D (2009).
+ [5] Cohas E, Bonenfant C, Kempaners B, Allainé D (2009).
Age-specific effect of heterozygosity on survival in alpine
marmots, <span class="i"><span style="font-style: italic;">Marmota
+
marmota</span>.</span><span style="font-style: italic;">Molecular
+
Ecology</span> <span style="font-weight: bold;">18</span>:
1491-1503.<br>
<br>
- [6] O'Brien J, Devillard S, Say L, Vanthomme A, Léger F,
- Ruette S, Pontier D (2009). Preserving genetic integrity in a
+ [6] O'Brien J, Devillard S, Say L, Vanthomme A, Léger F, Ruette
+ S, Pontier D (2009). Preserving genetic integrity in a
hybridising world:<br>
are European Wildcats (<span style="font-style: italic;">Felis
silvestris silvestris</span>) in eastern France distinct from
@@ -249,16 +255,17 @@
+
australis</i> in North America. <span style="font-style:
italic;">Biological Invasions</span>. doi:
10.1007/s10530-010-9699-6.<br>
<br>
- [12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL,
- T. NHU VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI,
- J.-C. MAILLARD (2009) How does farmer connectivity influence
- livestock genetic structure? A case-study in a Vietnamese goat
- population. <span style="font-style: italic;">Molecular Ecology</span>
- <span style="font-weight: bold;">18</span>: 3980-3991<br>
+ [12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL, T. NHU
+ VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI, J.-C.
+ MAILLARD (2009) How does farmer connectivity influence livestock
+ genetic structure? A case-study in a Vietnamese goat population.
+ <span style="font-style: italic;">Molecular Ecology</span> <span
+ style="font-weight: bold;">18</span>: 3980-3991<br>
<br>
[13] <span class="name"><span class="forenames">COLIN J.</span>
<span class="surname">GARROWAY</span><sup><nobr></nobr></sup></span>,
@@ -298,10 +305,10 @@
style="text-decoration: underline;"></span></span>1965-1977<br>
<br>
[15] Gwenaelle Comont, Marie-France Corio-Costet,
- Philippe Larignon and François Delmotte (2010)
- AFLP markers reveal two genetic groups in the French population
- of the grapevine fungal pathogen <i>Phaeomoniella
- chlamydospora. European Journal of Plant Pathology</i> Doi:
+ Philippe Larignon and François Delmotte (2010) AFLP
+ markers reveal two genetic groups in the French population of
+ the grapevine fungal pathogen <i>Phaeomoniella chlamydospora.
+ European Journal of Plant Pathology</i> Doi:
10.1007/s10658-010-9611-3<br>
<br>
[16] <span class="name"><span class="forenames">Michelle F.</span>
@@ -342,16 +349,16 @@
style="font-style: italic;">Animal Genetics </span><span
style="font-weight: bold;">41</span>: 47-63.<br>
</span><span class="authors"><span style="white-space:
- nowrap;">[20] Denis Laloë</span>, <span
- style="white-space: nowrap;">Katayoun Moazami-Goudarzi</span>,
- <span style="white-space: nowrap;">Johannes A. Lenstra</span>,
- <span style="white-space: nowrap;">Paolo Ajmone Marsan</span>,
- <span style="white-space: nowrap;">Pedro Azor</span>, <span
+ nowrap;">[20] Denis Laloë</span>, <span style="white-space:
+ nowrap;">Katayoun Moazami-Goudarzi</span>, <span
+ style="white-space: nowrap;">Johannes A. Lenstra</span>, <span
+ style="white-space: nowrap;">Paolo Ajmone Marsan</span>, <span
+ style="white-space: nowrap;">Pedro Azor</span>, <span
style="white-space: nowrap;">Roswitha Baumung</span>, <span
style="white-space: nowrap;">Daniel G. Bradley</span>, <span
style="white-space: nowrap;">Michael W. Bruford</span>, <span
- style="white-space: nowrap;">Javier Cañón</span>,
- <span style="white-space: nowrap;">Gaudenz Dolf</span>, <span
+ style="white-space: nowrap;">Javier Cañón</span>, <span
+ style="white-space: nowrap;">Gaudenz Dolf</span>, <span
style="white-space: nowrap;">Susana Dunner</span>, <span
style="white-space: nowrap;">Georg Erhardt</span>, <span
style="white-space: nowrap;">Godfrey Hewitt</span>, <span
@@ -368,7 +375,7 @@
<b>2010</b>, <em>2</em>(6), 932-945; doi:10.3390/d2060932</span><br>
<span style="display: block;" id="records_chunks"><br>
</span><span class="citation_author">[21] Gautier M, </span> <span
- class="citation_author">Laloë D, </span> <span
+ class="citation_author">Laloë D, </span> <span
class="citation_author">Moazami-Goudarzi K, </span> <span
class="citation_date">2010</span> <span
class="citation_article_title">Insights into the Genetic
@@ -397,15 +404,17 @@
+
Oct 6. [Epub ahead of print]<br>
</p>
<p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
- ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
+ ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
allochronic speciation in the pine processionary moth (<em>Thaumetopoea
+
pityocampa</em>, Lepidoptera, Notodontidae). <span
style="font-style: italic;">Journal of Evolutionary Biology</span>,
no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
@@ -420,6 +429,7 @@
+
Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
<p class="intro">[26] <span class="citation_author">Vandewoestijne
@@ -427,6 +437,7 @@
+
S, </span> <span class="citation_author">Van Dyck H, </span>
<span class="citation_date">2010</span> <span
class="citation_article_title">Population Genetic
@@ -437,6 +448,7 @@
+
ONE</span><span class="citation_issue">5(11):</span> <span
class="citation_start_page">e13810.</span> <span
class="citation_doi">doi:10.1371/journal.pone.0013810<br>
@@ -458,6 +470,7 @@
+
</span><span class="doi"><span class="label">DOI:</span> <span
class="value">10.1007/s10329-010-0232-4<br>
</span></span></p>
@@ -516,6 +529,7 @@
+
tetradactylum</em>: Polynemidae). Molecular Ecology,
20: no. doi: 10.1111/j.1365-294X.2011.05097.x<br>
</p>
@@ -532,6 +546,7 @@
+
neoformans</i> Variety <i>grubii</i> Multilocus Sequence
Types from Thailand Are Consistent with an Ancestral African
Origin.</span> <span class="citation_journal_title">PLoS
@@ -549,14 +564,10 @@
<p class="intro">[38] A. Mercier, D. Ajzenberg, S.<span
class="hit">Devillard</span>, M.P. Demar, B. de Thoisy, H.
Bonnabau, F. Collinet, R. Boukhari, D. Blanchet, S. Simon, B.
- Carme, M.-L. Dardé (<span style="font-style: italic;">in
-
-
-
-
- press</span>) Human impact on genetic diversity of <span
- style="font-style: italic;">Toxoplasma gondii</span>:
- Example of the anthropized environment from French Guiana. <br>
+ Carme, M.-L. Dardé (<span style="font-style: italic;">in press</span>)
+ Human impact on genetic diversity of <span style="font-style:
+ italic;">Toxoplasma gondii</span>: Example of the
+ anthropized environment from French Guiana. <br>
Infection, Genetics and Evolution.<br>
</p>
<p class="intro">[39] MONTANO, V., FERRI, G., MARCARI, V.,
@@ -571,23 +582,18 @@
World Creole cattle breed. Molecular Ecology, 20: no.
doi: 10.1111/j.1365-294X.2011.05163.x<br>
</p>
- <p class="intro">[41] Šingliarová, Barbora ; Chrtek,
- Jindřich ; Plačková, Ivana ;Mráz, Patrik (2001)
- Allozyme Variation in Diploid, Polyploid and Mixed-Ploidy
- Populations of the <span style="font-style: italic;">Pilosella
-
-
-
-
- alpicola</span> Group (Asteraceae): Relation to Morphology,
- Origin of Polyploids and Breeding System . Folia Geobotanica:
- 1-24. Doi: 10.1007/s12224-011-9102-0<br>
+ <p class="intro">[41] Šingliarová, Barbora ; Chrtek, Jindřich ;
+ Plačková, Ivana ;Mráz, Patrik (2001) Allozyme Variation in
+ Diploid, Polyploid and Mixed-Ploidy Populations of the <span
+ style="font-style: italic;">Pilosella alpicola</span> Group
+ (Asteraceae): Relation to Morphology, Origin of Polyploids and
+ Breeding System . Folia Geobotanica: 1-24. Doi:
+ 10.1007/s12224-011-9102-0<br>
</p>
<p class="intro">[42] Penner, J., Wegmann, M., Hillers, A.,
- Schmidt, M. and Rödel, M.-O. (2011), A hotspot revisited
- – a biogeographical analysis of West African amphibians.
- Diversity and Distributions.
- doi: 10.1111/j.1472-4642.2011.00801.x<br>
+ Schmidt, M. and Rödel, M.-O. (2011), A hotspot revisited – a
+ biogeographical analysis of West African amphibians. Diversity
+ and Distributions. doi: 10.1111/j.1472-4642.2011.00801.x<br>
</p>
<p class="intro">[43] SCHMIDT, D. J., BOND, N. R., ADAMS, M. and
HUGHES, J. M. (2011), Cytonuclear evidence for hybridogenetic
@@ -622,11 +628,11 @@
Biology. DOI: 10.1007/s00227-011-1772-x<br>
</p>
<p class="intro">[48] Hugo R. Oliveira, Huw Jones, Fiona Leigh,
- Diane L. Lister, Martin K. Jones and Leonor
- Peña-Chocarro (2011) Phylogeography of einkorn
- landraces in the Mediterranean basin and Central Europe:
- population structure and cultivation history. ARCHAEOLOGICAL
- AND ANTHROPOLOGICAL SCIENCES. DOI: 10.1007/s12520-011-0076-x<br>
+ Diane L. Lister, Martin K. Jones and Leonor Peña-Chocarro
+ (2011) Phylogeography of einkorn landraces in the
+ Mediterranean basin and Central Europe: population structure
+ and cultivation history. ARCHAEOLOGICAL AND ANTHROPOLOGICAL
+ SCIENCES. DOI: 10.1007/s12520-011-0076-x<br>
</p>
<p class="intro">[49] DAILIANIS, T., TSIGENOPOULOS, C. S.,
DOUNAS, C. and VOULTSIADOU, E. (2011), Genetic diversity of
@@ -636,42 +642,40 @@
conservation. Molecular Ecology. doi:
10.1111/j.1365-294X.2011.05222.x<br>
</p>
- <p class="intro">[50] Say, L., Devillard, S., Léger, F.,
+ <p class="intro">[50] Say, L., Devillard, S., Léger, F.,
Pontier, D. and Ruette, S. (2011), Distribution and spatial
genetic structure of European wildcat in France. Animal
Conservation. doi: 10.1111/j.1469-1795.2011.00478.x<br>
</p>
<p class="intro"></p>
- <p class="intro">[51]* PALERO, F., ABELLÓ, P.,
- MACPHERSON, E., BEAUMONT, M. and PASCUAL, M. (2011), Effect of
- oceanographic barriers and overfishing on the population
- genetic structure of the European spiny lobster (<span
- style="font-style: italic;">Palinurus elephas</span>).
- Biological Journal of the Linnean Society. doi:
- 10.1111/j.1095-8312.2011.01728.x<br>
+ <p class="intro">[51]* PALERO, F., ABELLÓ, P., MACPHERSON, E.,
+ BEAUMONT, M. and PASCUAL, M. (2011), Effect of oceanographic
+ barriers and overfishing on the population genetic structure
+ of the European spiny lobster (<span style="font-style:
+ italic;">Palinurus elephas</span>). Biological Journal of
+ the Linnean Society. doi: 10.1111/j.1095-8312.2011.01728.x<br>
</p>
- [52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L,
- Taglioli L, Pettener D, Ghaderi A, Romeo G, Luiselli D (2011)
- Discordant Patterns of mtDNA and Ethno-Linguistic Variation in
- 14 Iranian Ethnic Groups. Hum Hered 2011;72:73-84 (DOI:
- 10.1159/000330166) <br>
+ [52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L, Taglioli L,
+ Pettener D, Ghaderi A, Romeo G, Luiselli D (2011) Discordant
+ Patterns of mtDNA and Ethno-Linguistic Variation in 14 Iranian
+ Ethnic Groups. Hum Hered 2011;72:73-84 (DOI: 10.1159/000330166)
<br>
- [53] Mónica Balzarini, Ingrid Teich, Cecilia Bruno,
- Andrea Peña (2011) Making genetic biodiversity
- measurable: a review of statistical multivariate methods to
- study variability at gene level. Rev. FCA UNCUYO 43 (1):
- 261-275. ISSN 0370-4661.<br>
<br>
+ [53] Mónica Balzarini, Ingrid Teich, Cecilia Bruno, Andrea Peña
+ (2011) Making genetic biodiversity measurable: a review of
+ statistical multivariate methods to study variability at gene
+ level. Rev. FCA UNCUYO 43 (1): 261-275. ISSN 0370-4661.<br>
+ <br>
[54] HENK, D. A., EAGLE, C. E., BROWN, K., VAN DEN BERG, M. A.,
DYER, P. S., PETERSON, S. W. and FISHER, M. C. (2011),
Speciation despite globally overlapping distributions in
Penicilm chrysogenum: the population genetics of Alexander
- Fleming’s lucky fungus. Molecular Ecology. doi:
+ Fleming’s lucky fungus. Molecular Ecology. doi:
10.1111/j.1365-294X.2011.05244.x<br>
<br>
- [55] Pineda MC, López-Legentil S, Turon X, 2011 The
- Whereabouts of an Ancient Wanderer: Global Phylogeography of the
- Solitary Ascidian Styela plicata. PLoS ONE 6(9): e25495.
+ [55] Pineda MC, López-Legentil S, Turon X, 2011 The Whereabouts
+ of an Ancient Wanderer: Global Phylogeography of the Solitary
+ Ascidian Styela plicata. PLoS ONE 6(9): e25495.
doi:10.1371/journal.pone.0025495<br>
<br>
[56] James PMA, Coltman DW, Murray BW, Hamelin RC, Sperling FAH,
@@ -680,10 +684,10 @@
ONE 6(10): e25359. doi:10.1371/journal.pone.0025359<br>
<br>
[57] CHARPENTIER, M. J. E., FONTAINE, M. C., CHEREL, E.,
- RENOULT, J. P., JENKINS, T., BENOIT, L., BARTHÈS, N.,
- ALBERTS, S. C. and TUNG, J. (2011), Genetic structure in a
- dynamic baboon hybrid zone corroborates behavioural observations
- in a hybrid population. Molecular Ecology.
+ RENOULT, J. P., JENKINS, T., BENOIT, L., BARTHÈS, N., ALBERTS,
+ S. C. and TUNG, J. (2011), Genetic structure in a dynamic baboon
+ hybrid zone corroborates behavioural observations in a hybrid
+ population. Molecular Ecology.
doi: 10.1111/j.1365-294X.2011.05302.x<br>
<br>
[58] Erin L. Koen, Jeff Bowman, Colin J. Garroway, Stephen C.
@@ -696,10 +700,10 @@
a potentially important vector of highly pathogenic avian
influenza viruses. Ecology and Evolution. doi: 10.1002/ece3.46<br>
<br>
- [60]* Gärke, C., Ytournel, F., Bed’hom, B., Gut, I.,
- Lathrop, M., Weigend, S. and Simianer, H. (2011), Comparison of
- SNPs and microsatellites for assessing the genetic structure of
- chicken populations. Animal Genetics. doi:
+ [60]* Gärke, C., Ytournel, F., Bed’hom, B., Gut, I., Lathrop,
+ M., Weigend, S. and Simianer, H. (2011), Comparison of SNPs and
+ microsatellites for assessing the genetic structure of chicken
+ populations. Animal Genetics. doi:
10.1111/j.1365-2052.2011.02284.x<br>
<br>
[61] DEVILLARD, S., SANTIN-JANIN, H., SAY, L. and PONTIER, D.
@@ -719,25 +723,25 @@
opportunistic human pathogen Aspergillus fumigatus. Molecular
Ecology. doi: 10.1111/j.1365-294X.2011.05364.x<br>
<br>
- [64] F. Besnier, K. A. Glover, Ø. Skaala (2011)
- Investigating genetic change in wild populations: modelling gene
- flow from farm escapees. AQUACULTURE ENVIRONMENT INTERACTIONS
- Vol. 2: 75–86, 2011 doi: 10.3354/aei00032<br>
+ [64] F. Besnier, K. A. Glover, Ø. Skaala (2011) Investigating
+ genetic change in wild populations: modelling gene flow from
+ farm escapees. AQUACULTURE ENVIRONMENT INTERACTIONS Vol. 2:
+ 75–86, 2011 doi: 10.3354/aei00032<br>
<br>
[65] Montanari, S. R., van Herwerden, L., Pratchett, M. S.,
Hobbs, J.-P. A. and Fugedi, A. (2011), Reef fish hybridization:
lessons learnt from butterflyfishes (genus Chaetodon). Ecology
and Evolution. doi: 10.1002/ece3.83<br>
<br>
- [66] Andrés García-Lor, François Luro, Luis
- Navarro and Patrick Ollitrault (2011). Comparative use of
- InDel and SSR markers in deciphering the interspecific structure
- of cultivated citrus genetic diversity: a perspective for
- genetic association studies. MOLECULAR GENETICS AND GENOMICS
- DOI: 10.1007/s00438-011-0658-4<br>
+ [66] Andrés García-Lor, François Luro, Luis Navarro and Patrick
+ Ollitrault (2011). Comparative use of InDel and SSR
+ markers in deciphering the interspecific structure of cultivated
+ citrus genetic diversity: a perspective for genetic association
+ studies. MOLECULAR GENETICS AND GENOMICS DOI:
+ 10.1007/s00438-011-0658-4<br>
<br>
[67] R.M. Fewster, S.D. Miller, and J. Ritchie (2011) DNA
- profiling – a management tool for rat eradication. Pages 426-431
+ profiling – a management tool for rat eradication. Pages 426-431
In: Veitch, C. R.; Clout, M. N. and Towns, D. R. (eds.). <span
style="font-style: italic;">Island invasives: eradication and
management</span>. 426 Gland, Switzerland.<br>
@@ -766,10 +770,10 @@
EUROPEAN JOURNAL OF FOREST RESEARCH. Online First, 24 January
2012<br>
<br>
- [72] VANDER WAL, E., PAQUET, P. C. and ANDRÉS, J. A.
- (2012), Influence of landscape and social interactions on
- transmission of disease in a social cervid. Molecular Ecology.
- doi: 10.1111/j.1365-294X.2011.05431.x<br>
+ [72] VANDER WAL, E., PAQUET, P. C. and ANDRÉS, J. A. (2012),
+ Influence of landscape and social interactions on transmission
+ of disease in a social cervid. Molecular Ecology. doi:
+ 10.1111/j.1365-294X.2011.05431.x<br>
<br>
[73]* Amaral AR , Beheregaray LB , Bilgmann K , Boutov D ,
Freitas L , et al. 2012 Seascape Genetics of a Globally
@@ -777,12 +781,11 @@
Common Dolphin (Genus Delphinus). PLoS ONE 7(2): e31482.
doi:10.1371/journal.pone.0031482<br>
<br>
- [74]* Gagnaire PA, Normandeau E, Côté C,
- Møller Hansen M, and Bernatchez L (2012) The Genetic
- Consequences of Spatially Varying Selection in the Panmictic
- American Eel (<span style="font-style: italic;">Anguilla
- rostrata</span>). Genetics 2012 190:725-736.
- doi:10.1534/genetics.111.134825<br>
+ [74]* Gagnaire PA, Normandeau E, Côté C, Møller Hansen M, and
+ Bernatchez L (2012) The Genetic Consequences of Spatially
+ Varying Selection in the Panmictic American Eel (<span
+ style="font-style: italic;">Anguilla rostrata</span>).
+ Genetics 2012 190:725-736. doi:10.1534/genetics.111.134825<br>
<br>
[75] Cyr F and Angers B (2012) Historical process lead to false
genetic signal of current connectivity among populations.
@@ -792,6 +795,7 @@
+
10.1007/s10709-012-9640-2<br>
<br>
[76] Samantha Baldwin, Meeghan Pither-Joyce, Kathryn Wright,
@@ -805,17 +809,17 @@
with a Focus on the Southwest Islands of Japan. PLoS ONE 7(4):
e35000. doi:10.1371/journal.pone.0035000<br>
<br>
- [78] Bracco, M., Lia, V.V., Hernández, J.C., Poggio, L.
- and Gottlieb, A.M. (2012), Genetic diversity of maize landraces
- from lowland and highland agro-ecosystems of Southern South
- America: implications for the conservation of native resources.
- Annals of Applied Biology, 160: 308–321. doi:
+ [78] Bracco, M., Lia, V.V., Hernández, J.C., Poggio, L. and
+ Gottlieb, A.M. (2012), Genetic diversity of maize landraces from
+ lowland and highland agro-ecosystems of Southern South America:
+ implications for the conservation of native resources. Annals of
+ Applied Biology, 160: 308–321. doi:
10.1111/j.1744-7348.2012.00544.x<br>
<br>
[79] E. Mutegi, F. Sagnard, M. Labuschagne, L. Herselman, K.
Semagn, M. Deu, S. de Villiers, B. M. Kanyenji, C. N. Mwongera
and P. C. S. Traore, et al. (2012) Local scale patterns of gene
- flow and genetic diversity in a crop–wild–weedy complex of
+ flow and genetic diversity in a crop–wild–weedy complex of
sorghum (Sorghum bicolor (L.) Moench) under traditional
agricultural field conditions in Kenya. CONSERVATION GENETICS.
DOI: 10.1007/s10592-012-0353-y<br>
@@ -829,9 +833,9 @@
Kootenay Lake Kokanee. North American Journal of Fisheries
Management Vol. 32, Iss. 2, 2012<br>
<br>
- [82] Rius M, Turon X, Ordóñez V, Pascual M (2012)
- Tracking Invasion Histories in the Sea: Facing Complex Scenarios
- Using Multilocus Data. PLoS ONE 7(4): e35815.
+ [82] Rius M, Turon X, Ordóñez V, Pascual M (2012) Tracking
+ Invasion Histories in the Sea: Facing Complex Scenarios Using
+ Multilocus Data. PLoS ONE 7(4): e35815.
doi:10.1371/journal.pone.0035815<br>
<br>
[83] Uzma Alam, Chaz Hyseni, Rebecca E. Symula, Corey
@@ -840,23 +844,23 @@
Serap Aksoy. Appl. Environ. Microbiol. AEM.00806-12; published
ahead of print 27 April 2012, doi:10.1128/AEM.00806-12<br>
<br>
- [84] DUTECH, C., BARRÈS, B., BRIDIER, J., ROBIN, C.,
- MILGROOM, M. G. and RAVIGNÉ, V. (2012), The chestnut
- blight fungus world tour: successive introduction events from
- diverse origins in an invasive plant fungal pathogen. Molecular
- Ecology. doi: 10.1111/j.1365-294X.2012.05575.x<br>
+ [84] DUTECH, C., BARRÈS, B., BRIDIER, J., ROBIN, C., MILGROOM,
+ M. G. and RAVIGNÉ, V. (2012), The chestnut blight fungus world
+ tour: successive introduction events from diverse origins in an
+ invasive plant fungal pathogen. Molecular Ecology. doi:
+ 10.1111/j.1365-294X.2012.05575.x<br>
<br>
[85] REDING, D. M., BRONIKOWSKI, A. M., JOHNSON, W. E. and
CLARK, W. R. (2012), Pleistocene and ecological effects on
continental-scale genetic differentiation in the bobcat (Lynx
rufus). Molecular Ecology. doi: 10.1111/j.1365-294X.2012.05595.x<br>
<br>
- [86] Marina Mergey, Jérémy Larroque, Sandrine
- Ruette, Jean-Michel Vandel, Rémi Helder, Guillaume Queney
- and Sébastien Devillard (2012) Linking habitat
- characteristics with genetic diversity of the European pine
- marten (Martes martes) in France. EUROPEAN JOURNAL OF WILDLIFE
- RESEARCH. DOI: 10.1007/s10344-012-0634-2<br>
+ [86] Marina Mergey, Jérémy Larroque, Sandrine Ruette,
+ Jean-Michel Vandel, Rémi Helder, Guillaume Queney and Sébastien
+ Devillard (2012) Linking habitat characteristics with genetic
+ diversity of the European pine marten (Martes martes) in France.
+ EUROPEAN JOURNAL OF WILDLIFE RESEARCH. DOI:
+ 10.1007/s10344-012-0634-2<br>
<br>
[87] Y Liu I Keller and G Heckel (2012) Breeding site fidelity
and winter admixture in a long-distance migrant, the tufted duck
@@ -897,12 +901,12 @@
Taxonomy, Evolution and Genetic Diversity. PLoS ONE 7(5):
e37063. doi:10.1371/journal.pone.0037063<br>
<br>
- [94] Burgos-Paz, W., Souza, C. A., Castelló, A.,
- Mercadé, A., Okumura, N., Sheremet'eva, I. N., Huang, L.
- S., Cho, I. C., Paiva, S. R., Ramos-Onsins, S. and
- Pérez-Enciso, M. (2012), Worldwide genetic relationships
- of pigs as inferred from X chromosome SNPs. Animal Genetics.
- doi: 10.1111/j.1365-2052.2012.02374.x<br>
+ [94] Burgos-Paz, W., Souza, C. A., Castelló, A., Mercadé, A.,
+ Okumura, N., Sheremet'eva, I. N., Huang, L. S., Cho, I. C.,
+ Paiva, S. R., Ramos-Onsins, S. and Pérez-Enciso, M. (2012),
+ Worldwide genetic relationships of pigs as inferred from X
+ chromosome SNPs. Animal Genetics. doi:
+ 10.1111/j.1365-2052.2012.02374.x<br>
<br>
[95] Warmuth, V., Manica, A., Eriksson, A., Barker, G. and
Bower, M. (2012), Autosomal genetic diversity in non-breed
@@ -933,9 +937,9 @@
Gradients in a Climate Change-Sensitive Mammal: The American
Pika. PLoS ONE 7(6): e39077. doi:10.1371/journal.pone.0039077</p>
<p class="intro">[100] Tuomas Leinonen, R.J. Scott McCairns,
- Gábor Herczeg, Juha Merilä (2012) MULTIPLE
- EVOLUTIONARY PATHWAYS TO DECREASED LATERAL PLATE COVERAGE IN
- FRESHWATER THREESPINE STICKLEBACKS. Evolution. DOI:
+ Gábor Herczeg, Juha Merilä (2012) MULTIPLE EVOLUTIONARY
+ PATHWAYS TO DECREASED LATERAL PLATE COVERAGE IN FRESHWATER
+ THREESPINE STICKLEBACKS. Evolution. DOI:
10.1111/j.1558-5646.2012.01724.x<br>
</p>
<p class="intro">[101] GOEDBLOED, D. J., MEGENS, H.J., Van
@@ -950,24 +954,24 @@
T., KOU, A., HOUGHTON, P., SMITH, D. G. and LERCHE, N. (2012),
A Large-Scale SNP-Based Genomic Admixture Analysis of the
Captive Rhesus Macaque Colony at the California National
- Primate Research Center. Am. J. Primatol., 74: 747–757. doi:
+ Primate Research Center. Am. J. Primatol., 74: 747–757. doi:
10.1002/ajp.22025<br>
</p>
- <p class="intro">[103] Urška Demšar, Paul Harris, Chris
+ <p class="intro">[103] Urška Demšar, Paul Harris, Chris
Brunsdon, A. Stewart Fotheringham, Sean McLoone (2012)
Principal Component Analysis on Spatial Data: An Overview.
Annals of the Association of American Geographers.
DOI:10.1080/00045608.2012.689236<br>
</p>
- <p class="intro">[104]* RAMÍREZ, J. D., GUHL, F.,
- MESSENGER, L. A., LEWIS, M. D., MONTILLA, M., CUCUNUBA, Z.,
- MILES, M. A. and LLEWELLYN, M. S. (2012), Contemporary cryptic
- sexuality in Trypanosoma cruzi. Molecular Ecology. doi:
+ <p class="intro">[104]* RAMÍREZ, J. D., GUHL, F., MESSENGER, L.
+ A., LEWIS, M. D., MONTILLA, M., CUCUNUBA, Z., MILES, M. A. and
+ LLEWELLYN, M. S. (2012), Contemporary cryptic sexuality in
+ Trypanosoma cruzi. Molecular Ecology. doi:
10.1111/j.1365-294X.2012.05699.x<br>
</p>
<p class="intro">[105] Rod Peakall and Peter Smouse (2012)
GenAlEx 6.5: Genetic analysis in Excel. Population genetic
- software for teaching and research – an update. Bioinformatics
+ software for teaching and research – an update. Bioinformatics
first published online July 20, 2012
doi:10.1093/bioinformatics/bts460<br>
</p>
@@ -977,12 +981,12 @@
clavigignenti-juglandacearum, in North American forests.
Ecology and Evolution. doi: 10.1002/ece3.332<br>
</p>
- <p class="intro">[107] GRÜNWALD, N. J. (2012), Novel
- insights into the emergence of pathogens: the case of chestnut
- blight. Molecular Ecology, 21: 3896–3897. doi:
+ <p class="intro">[107] GRÜNWALD, N. J. (2012), Novel insights
+ into the emergence of pathogens: the case of chestnut blight.
+ Molecular Ecology, 21: 3896–3897. doi:
10.1111/j.1365-294X.2012.05597.x<br>
</p>
- <p class="intro">[108] T Skrbinšek, M Jelenčič, L P Waits, H
+ <p class="intro">[108] T Skrbinšek, M Jelenčič, L P Waits, H
Potočnik, I Kos and P Trontelj (2012) Using a reference
population yardstick to calibrate and compare genetic
diversity reported in different studies: an example from the
@@ -1076,10 +1080,10 @@
Connectivity. Journal of the American Statistical Association.
DOI:10.1080/01621459.2012.724647<br>
</p>
- <p class="intro">[123] Pérez-Portela, R., Almada, V. and
- Turon, X. (2012), Cryptic speciation and genetic structure of
- widely distributed brittle stars (Ophiuroidea) in Europe.
[TRUNCATED]
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