[adegenet-commits] r1069 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Jan 31 12:49:46 CET 2013
Author: jombart
Date: 2013-01-31 12:49:46 +0100 (Thu, 31 Jan 2013)
New Revision: 1069
Modified:
www/literature.html
Log:
+1ref
Modified: www/literature.html
===================================================================
--- www/literature.html 2013-01-31 11:27:36 UTC (rev 1068)
+++ www/literature.html 2013-01-31 11:49:46 UTC (rev 1069)
@@ -1,9 +1,10 @@
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- <meta content="text/html; charset=iso-8859-1" http-equiv="content-type">
- <title>documentation</title>
- <script type="text/javascript">
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+ http-equiv="content-type">
+ <title>documentation</title>
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@@ -15,1048 +16,1429 @@
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})();
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-</head>
-
-<body>
-<br>
-<br>
-<br>
-
-
-<div style="margin-left: 40px;">
-<span style="text-decoration: underline;">To cite adegenet:</span><br>
-<br>
-<span style="color: rgb(0, 153, 0);">Jombart T</span><span
-style="color: rgb(0, 153, 0);">.</span><span
-style="color: rgb(0, 153, 0);">(</span><span
-style="font-style: italic; color: rgb(0, 153, 0);"></span><span
-style="color: rgb(0, 153, 0);">2008)</span><span
-style="font-weight: bold; color: rgb(0, 153, 0);"></span><span
-style="color: rgb(0, 153, 0);">adegenet: a R package for the multivariate
-analysis of genetic markers. </span><span
-style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
-style="color: rgb(0, 153, 0);"></span><span
-style="font-weight: bold; color: rgb(0, 153, 0);">24</span><span
-style="color: rgb(0, 153, 0);">: 1403-1405. doi: 10.1093/bioinformatics/btn129
-[</span><a style="color: rgb(0, 153, 0);"
+ </head>
+ <body>
+ <br>
+ <br>
+ <br>
+ <div style="margin-left: 40px;">
+ <span style="text-decoration: underline;">To cite adegenet:</span><br>
+ <br>
+ <span style="color: rgb(0, 153, 0);">Jombart T</span><span
+ style="color: rgb(0, 153, 0);">.</span><span style="color:
+ rgb(0, 153, 0);">(</span><span style="font-style: italic; color:
+ rgb(0, 153, 0);"></span><span style="color: rgb(0, 153, 0);">2008)</span><span
+ style="font-weight: bold; color: rgb(0, 153, 0);"></span><span
+ style="color: rgb(0, 153, 0);">adegenet: a R package for the
+ multivariate
+ analysis of genetic markers. </span><span style="font-style:
+ italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
+ style="color: rgb(0, 153, 0);"></span><span style="font-weight:
+ bold; color: rgb(0, 153, 0);">24</span><span style="color:
+ rgb(0, 153, 0);">: 1403-1405. doi: 10.1093/bioinformatics/btn129
+ [</span><a style="color: rgb(0, 153, 0);"
href="http://bioinformatics.oxfordjournals.org/cgi/reprint/btn129?ijkey=6sqx5BTXCdYtBZz&keytype=ref">link</a><span
-style="color: rgb(0, 153, 0);">to a free pdf]</span><br>
-<br>
-<span style="color: rgb(0, 153, 0);">Jombart T. and Ahmed I. (2011)
-</span><span
-style="font-style: italic; color: rgb(0, 153, 0);">adegenet
-1.3-1</span><span style="color: rgb(0, 153, 0);">: new tools for the
-analysis of genome-wide SNP data. </span><span
-style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
-style="color: rgb(0, 153, 0);">. doi: 10.1093/bioinformatics/btr521
-[</span><a style="color: rgb(0, 153, 0);"
+ style="color: rgb(0, 153, 0);">to a free pdf]</span><br>
+ <br>
+ <span style="color: rgb(0, 153, 0);">Jombart T. and Ahmed I.
+ (2011)
+ </span><span style="font-style: italic; color: rgb(0, 153, 0);">adegenet
+ 1.3-1</span><span style="color: rgb(0, 153, 0);">: new tools for
+ the
+ analysis of genome-wide SNP data. </span><span
+ style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
+ style="color: rgb(0, 153, 0);">. doi:
+ 10.1093/bioinformatics/btr521
+ [</span><a style="color: rgb(0, 153, 0);"
href="http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr521">link
-to the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span> <br
-style="color: rgb(0, 153, 0);">
-<br>
-<br style="color: rgb(0, 153, 0);">
-<br>
-<span style="text-decoration: underline;">Related publications:<br>
-<br style="text-decoration: underline;">
-</span>- a review of applications of multivariate analyses to genetic markers
-data:<br>
-<b>Jombart T</b>, Pontier D, Dufour AB. (2009) <span
-style="font-style: italic;"></span> Genetic markers in the playground of
-multivariate analysis. <span style="font-style: italic;">Heredity </span><span
-style="font-weight: bold;">102</span>: 330-341. doi:10.1038/hdy.2008.130<span
-style="font-style: italic;">. </span>[<a
+to
+ the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
+ <br style="color: rgb(0, 153, 0);">
+ <br>
+ <br style="color: rgb(0, 153, 0);">
+ <br>
+ <span style="text-decoration: underline;">Related publications:<br>
+ <br style="text-decoration: underline;">
+ </span>- a review of applications of multivariate analyses to
+ genetic markers
+ data:<br>
+ <b>Jombart T</b>, Pontier D, Dufour AB. (2009) <span
+ style="font-style: italic;"></span> Genetic markers in the
+ playground of
+ multivariate analysis. <span style="font-style: italic;">Heredity
+ </span><span style="font-weight: bold;">102</span>: 330-341.
+ doi:10.1038/hdy.2008.130<span style="font-style: italic;">. </span>[<a
href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy2008130a.pdf">link</a>
-to the journal's pdf - <a target="_new"
+ to the journal's pdf - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
-abstract</a>]<br>
-<br>
-- the paper presenting the <span style="font-style: italic;">spatial principal
-component analysis</span> (<span style="font-style: italic;">sPCA</span>,
-function <span
-style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>), global and
-local tests (<span
-style="font-family: monospace; color: rgb(255, 0, 0);">global.rtest</span>
-and <span
-style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
-<b>Jombart T, </b>Devillard S, Dufour AB, Pontier
-D<b></b>(2008)<b></b>Revealing cryptic spatial patterns in genetic variability
-by a new multivariate method. <span
-style="font-style: italic;">Heredity</span> <span
-style="font-weight: bold;">101</span>: 92-103. doi: 10.1038/hdy.2008.34 [<a
+ abstract</a>]<br>
+ <br>
+ - the paper presenting the <span style="font-style: italic;">spatial
+ principal
+ component analysis</span> (<span style="font-style: italic;">sPCA</span>,
+ function <span style="font-family: monospace; color: rgb(255, 0,
+ 0);">spca</span>), global and
+ local tests (<span style="font-family: monospace; color: rgb(255,
+ 0, 0);">global.rtest</span>
+ and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
+ <b>Jombart T, </b>Devillard S, Dufour AB, Pontier
+ D<b></b>(2008)<b></b>Revealing cryptic spatial patterns in genetic
+ variability
+ by a new multivariate method. <span style="font-style:
+ italic;">Heredity</span> <span style="font-weight: bold;">101</span>:
+ 92-103. doi: 10.1038/hdy.2008.34 [<a
href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
-on the journal's website - <a target="_new"
+ on the journal's website - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
-abstract</a>]<br>
-</div>
-<br>
-
-
-<div style="margin-left: 40px;">
-<span style="font-family: monospace; font-weight: bold;"></span><span
-style="font-family: monospace; font-weight: bold;"></span>- the paper
-presenting the <span style="font-style: italic;">SeqTrack </span>algorithm
-(<span style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
-and simulations of genealoies of haplotypes (<span
-style="font-family: monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
-<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010) Reconstructing disease
-outbreaks from genetic data: a graph approach. <span
-style="font-style: italic;">Heredity</span>. Doi: 10.1038/hdy.2010.78<br>
-<br>
-- the paper introducing the <span style="font-style: italic;">Discriminant
-Analysis of Principal Components</span> (<span
-style="font-style: italic;">DAPC</span>, functions <span
-style="font-family: monospace;"><span
-style="color: rgb(255, 0, 0);">find.clusters</span> </span>and <span
-style="font-family: monospace; color: rgb(255, 0, 0);">dapc</span>):<br>
-<b>Jombart T</b>, Devillard S and Balloux F <b></b>(2010) Discriminant analysis
-of principal components: a new method for the analysis of genetically
-structured populations. <i>BMC Genetics</i>
-<strong>11</strong><strong>:</strong>94.
-<span>doi:10.1186/1471-2156-11-94</span> [<a href="files/DAPCpaper.pdf">free
-pdf</a>] [<a href="http://www.biomedcentral.com/1471-2156/11/94">free html
-version</a>] [<a href="reviewDAPC.html">evaluation by Laurent Excoffier on
-F1000</a>] <br>
-<br>
-<br>
-<br>
-<span style="text-decoration: underline;">Publications citing
-adegenet:</span><br style="text-decoration: underline;">
-<br>
-[1] Cohas A, Yoccoz NG, Bonenfant C, Goossens B, Genton C, Galan M, Kempenaers
-B, Allainé D (2007) The<span style="color: rgb(0, 0, 0);">genetic
-similarity between pair members influences the frequency of extrapair paternity
-in alpine marmots</span>. <i>Animal Behaviour</i><i></i><span
-style="font-weight: bold;">76</span>: 87-95.<br>
-<br>
-[2] Satkoski JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi VS, Smith DG (2008)
-Pyrosequencing as a method for SNP identification in the rhesus macaque
-(<em>Macaca mulatta</em>). <span class="citation-abbreviation"><span
-style="font-style: italic;">BMC Genomics</span></span><span
-class="citation-publication-date"></span><span style="font-weight: bold;"
-class="citation-volume">9</span><span class="citation-issue"></span>: 256.<br>
-
-
-<div>
-<span class="citation-flpages"><br>
-[3] </span>Kanthaswamy S, Satkoski J, George D, Kou A, Erickson BJ, Smith DG.
-(2008). Interspecies hybridization and the stratification of nuclear genetic
-variation of rhesus (<span style="font-style: italic;">Macaca
-mulatta</span>) and long-tailed macaques (<span
-style="font-style: italic;">Macaca </span><span
-style="font-style: italic;">fascicularis</span>). <span
-style="font-style: italic;">Int J Primatol</span> <span
-style="font-weight: bold;">29</span>: 1295-1311.<br>
-<br>
-[4] Kidd, AG, Bowman J, Lesbarrères D, Schulte-Hostedde AI (2009).
-Hybridization between escaped domestic and wild American mink (<span
-style="font-style: italic;">Neovison vison</span>). <span
-style="font-style: italic;">Molecular Ecology</span> <span
-style="font-weight: bold;">18</span>: 1175-1186.<br>
-<br>
-[5] Cohas E, Bonenfant C, Kempaners B, Allainé D (2009). Age-specific effect of
-heterozygosity on survival in alpine marmots, <span class="i"><span
-style="font-style: italic;">Marmota marmota</span>.</span><span
-style="font-style: italic;">Molecular Ecology</span> <span
-style="font-weight: bold;">18</span>: 1491-1503.<br>
-<br>
-[6] O'Brien J, Devillard S, Say L, Vanthomme A, Léger F, Ruette S, Pontier D
-(2009). Preserving genetic integrity in a hybridising world:<br>
-are European Wildcats (<span style="font-style: italic;">Felis silvestris
-silvestris</span>) in eastern France distinct from sympatric feral domestic
-cats? <span style="font-style: italic;">Biodivers Conserv</span> <span
-style="font-weight: bold;">18</span>: 2351-2360.<br>
-<br>
-[7] Kanthaswamy S <span style="font-style: italic;">et al.</span> (2009).
-Canine Population Data Generated from a Multiplex STR Kit for Use in Forensic
-Casework. <span style="font-style: italic;">Journal of Forensic Sciences</span>
-<span style="font-weight: bold;">54</span>: 829-840.<br>
-<br>
-[8] Lankau R A, Nuzzo V, Spyreas G, Davis A S (2009). Evolutionary limits
-ameliorate the negative impact of an invasive plant. <span
-style="font-style: italic;">Proceedings of the National Academy of
-Sciences</span> <span style="font-weight: bold;">106</span>: 15362-15367.<br>
-<br>
-[9] Dutech C, Fabreguettes O, Capdevielle X, Robin C (2009) Multiple
-introductions of divergent genetic lineages in an invasive fungal pathogen,
-Cryphonectria parasitica, in France. <span
-style="font-style: italic;">Heredity</span> (advanced online) doi:
-10.1038/hdy.2009.164.<br>
-<br>
-[10] L Y Rutledge, C J Garroway, K M Loveless and B R Patterson (2010) Genetic
-differentiation of eastern wolves in Algonquin Park despite bridging gene flow
-between coyotes and grey wolves.<span
-style="font-style: italic;">Heredity</span> (advanced online) doi:
-10.1038/hdy.2010.6.<br>
-<br>
-[11] Jennifer Paul, Nicole Vachon, Colin J. Garroway and Joanna R. Freeland
-(2010) Molecular data provide strong evidence of natural hybridization between
-native and introduced lineages of <i>Phragmites australis</i> in North America.
-<span style="font-style: italic;">Biological Invasions</span>. doi:
-10.1007/s10530-010-9699-6.<br>
-<br>
-[12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL, T. NHU VAN, C. DANES,
-V. GROSBOIS, H. HOANG THANH, C. VU CHI, J.-C. MAILLARD (2009) How does farmer
-connectivity influence livestock genetic structure? A case-study in a
-Vietnamese goat population. <span style="font-style: italic;">Molecular
-Ecology</span> <span style="font-weight: bold;">18</span>: 3980-3991<br>
-<br>
-[13] <span class="name"><span class="forenames">COLIN J.</span> <span
-class="surname">GARROWAY</span><sup><nobr></nobr></sup></span>, <span
-class="name"><span class="forenames">JEFF</span> <span
-class="surname">BOWMAN</span></span>, <span class="name"><span
-class="forenames">TARA J.</span> <span class="surname">CASCADEN</span></span>,
-<span class="name"><span class="forenames">GILLIAN L.</span> <span
-class="surname">HOLLOWAY</span></span>, <span class="name"><span
-class="forenames">CAROLYN G.</span> <span class="surname">MAHAN</span></span>,
-<span class="name"><span class="forenames">JAY R.</span> <span
-class="surname">MALCOLM</span></span>, <span class="name"><span
-class="forenames">MICHAEL A.</span> <span
-class="surname">STEELE</span><sup><nobr></nobr></sup></span>, <span
-class="name"><span class="forenames">GREGORY</span> <span
-class="surname">TURNER</span></span> and <span class="name"><span
-class="forenames">PAUL J.</span> <span class="surname">WILSON</span> (2009)
-</span>Climate change induced hybridization in flying squirrels. <span
-style="font-style: italic;">Global Change Biology</span> <span
-style="font-weight: bold;">16</span>: 113-121.<br>
-<br>
-[14] <span class="name"><span class="forenames">JOSSELIN</span> <span
-class="surname">MONTARRY</span></span>, <span class="name"><span
-class="forenames">DIDIER</span> <span class="surname">ANDRIVON</span>,</span>
-<span class="name"><span class="forenames">ISABELLE</span> <span
-class="surname">GLAIS</span></span>, <span class="name"><span
-class="forenames">ROSELYNE</span> <span class="surname">CORBIERE</span></span>,
-<span class="name"><span class="forenames">GLADYS</span> <span
-class="surname">MIALDEA</span></span> and <span class="name"><span
-class="forenames">FRANCOIS</span> <span class="surname">DELMOTTE
-(2010)</span></span> Microsatellite markers reveal two admixed genetic groups
-and an ongoing displacement within the French population of the invasive plant
-pathogen <span class="i"><span style="font-style: italic;">Phytophthora
-infestans</span>. <span style="font-style: italic;">Molecular Ecology</span>
-<span style="font-weight: bold;">19</span>: <span
-style="text-decoration: underline;"></span></span>1965-1977<br>
-<br>
-[15] Gwenaelle Comont, Marie-France Corio-Costet, Philippe Larignon and
-François Delmotte (2010) AFLP markers reveal two genetic groups in the French
-population of the grapevine fungal pathogen <i>Phaeomoniella chlamydospora.
-European Journal of Plant Pathology</i> Doi: 10.1007/s10658-010-9611-3<br>
-<br>
-[16] <span class="name"><span class="forenames">Michelle F.</span> <span
-class="surname">DiLeo</span></span>, <span class="name"><span
-class="forenames">Jeffrey R.</span> <span class="surname">Row</span></span> and
-<span class="name"><span class="forenames">Stephen C.</span> <span
-class="surname">Lougheed (2010)</span></span> Discordant patterns of population
-structure for two co-distributed snake species across a fragmented Ontario
-landscape. <span style="font-style: italic;">Diversity and
-Distributions.</span> Doi: <span
-class="doi">10.1111/j.1472-4642.2010.00667.x<br>
-<br>
-[17] </span><span class="name"><span class="forenames">Francisco</span> <span
-class="surname">Balao</span><sup><nobr></nobr></sup></span>, <span
-class="name"><span class="forenames">Luis M.</span> <span
-class="surname">Valente</span><sup><nobr></nobr></sup></span>, <span
-class="name"><span class="forenames">Pablo</span> <span
-class="surname">Vargas</span><sup><nobr></nobr></sup> </span>, <span
-class="name"><span class="forenames">Javier</span> <span
-class="surname">Herrera</span><sup><nobr></nobr></sup> </span> and <span
-class="name"><span class="forenames">Salvador</span> <span
-class="surname">Talavera</span> (2010)</span> Radiative evolution of polyploid
-races of the Iberian carnation <span class="i">Dianthus broteri</span>
-(Caryophyllaceae).<span class="name"><sup
-style="font-style: italic;"><nobr></nobr></sup></span><span class="doi"><span
-style="font-style: italic;">New Phytologist. </span>Doi:</span><span
-class="doi">10.1111/j.1469-8137.2010.03280.x<br>
-<br>
-[18] </span>Gadieux P, Caffier V , Devaux M , Le Cam B(2010) Host-specific
-differentiation among populations of Venturia inaegualis causing scab on apple,
-pyracantha and loquat. <span style="font-style: italic;">FUNGAL GENETICS AND
-BIOLOGY</span> , 47: 511-521<br>
-<span style="display: block;" id="records_chunks"><br>
-[19] Joost S, Colli L, Baret PV, et al. (2010) Integrating geo-referenced
-multiscale and multidisciplinary data for the management of biodiversity in
-livestock genetic resources. <span style="font-style: italic;">Animal Genetics
-</span><span style="font-weight: bold;">41</span>: 47-63.<br>
- </span><span class="authors"><span
-style="white-space: nowrap;">[20] Denis Laloë</span>, <span
-style="white-space: nowrap;">Katayoun Moazami-Goudarzi</span>, <span
-style="white-space: nowrap;">Johannes A. Lenstra</span>, <span
-style="white-space: nowrap;">Paolo Ajmone Marsan</span>, <span
-style="white-space: nowrap;">Pedro Azor</span>, <span
-style="white-space: nowrap;">Roswitha Baumung</span>, <span
-style="white-space: nowrap;">Daniel G. Bradley</span>, <span
-style="white-space: nowrap;">Michael W. Bruford</span>, <span
-style="white-space: nowrap;">Javier Cañón</span>, <span
-style="white-space: nowrap;">Gaudenz Dolf</span>, <span
-style="white-space: nowrap;">Susana Dunner</span>, <span
-style="white-space: nowrap;">Georg Erhardt</span>, <span
-style="white-space: nowrap;">Godfrey Hewitt</span>, <span
-style="white-space: nowrap;">Juha Kantanen</span>, <span
-style="white-space: nowrap;">Gabriela Obexer-Ruff</span>, <span
-style="white-space: nowrap;">Ingrid Olsaker</span>, <span
-style="white-space: nowrap;">Clemen Rodellar</span>, <span
-style="white-space: nowrap;">Alessio Valentini</span>, <span
-style="white-space: nowrap;">Pamela Wiener</span> and <span
-style="white-space: nowrap;">European Cattle Genetic Diversity Consortium and
-Econogene Consortium</span></span> (2010) <span class="title">Spatial Trends of
-Genetic Variation of Domestic Ruminants in Europe</span>. <span
-class="idnt"><em>Diversity</em> <b>2010</b>, <em>2</em>(6), 932-945;
-doi:10.3390/d2060932</span><br>
-<span style="display: block;" id="records_chunks"><br>
-</span><span class="citation_author">[21] Gautier M, </span> <span
-class="citation_author">Laloë D, </span> <span
-class="citation_author">Moazami-Goudarzi K, </span> <span
-class="citation_date">2010</span> <span class="citation_article_title">Insights
-into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide
-Breeds. </span> <span style="font-style: italic;"
-class="citation_journal_title">PLoS ONE</span><span
-class="citation_issue"><span style="font-weight: bold;">5(9)</span>:</span>
-<span class="citation_start_page">e13038.</span> <span
-class="citation_doi">doi:10.1371/journal.pone.0013038</span><span
-class="citation_author">a<br>
-<br>
-</span>[22] Morris, C. E., D. C. Sands, J. L. Vanneste, J. Montarry, B. Oakley,
-et al. 2010. Inferring the evolutionary history of the plant pathogen
-<em>Pseudomonas syringae</em> from its biogeography in headwaters of rivers in
-North America, Europe, and New Zealand. <span style="font-style: italic;">mBio
-</span>1(3):e00107-10. doi:10.1128/mBio.00107-10. <br>
-
-
-<p class="auth_list"><a title="Biology letters.">[23] </a>Bower MA, Campana MG,
-Whitten M, Edwards CJ, Jones H, Barrett E, Cassidy R, Nisbet RE, Hill EW, Howe
-CJ, Binns M (2010) The cosmopolitan maternal heritage of the Thoroughbred
-racehorse breed shows a significant contribution from British and Irish native
-mares. <a style="font-style: italic;" title="Biology letters.">Biol
-Lett.</a><span style="font-style: italic;"></span>2010 Oct 6. [Epub ahead of
-print]<br>
-</p>
-
-<p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J., ROSSI, J.-P.,
-BRANCO, M. and KERDELHUÉ, C. , Incipient allochronic speciation in the pine
-processionary moth (<em>Thaumetopoea pityocampa</em>, Lepidoptera,
-Notodontidae). <span style="font-style: italic;">Journal of Evolutionary
-Biology</span>, no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
-</p>
-
-<p class="auth_list">[25] Giorgia Ferrara, Rita Cannas, Marco Stagioni, Giulia
-Riccioni, Piero Addis, Angelo Cau, Corrado Piccinetti, FaustoTinti (2010)
-Fishery genetics of mediterranean bluefin tuna: review of existing data,
-on-going studies and perspectives. <span style="font-style: italic;">Collect.
-Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
-
-<p class="intro">[26] <span class="citation_author">Vandewoestijne S, </span>
-<span class="citation_author">Van Dyck H, </span> <span
-class="citation_date">2010</span> <span
-class="citation_article_title">Population Genetic Differences along a
-Latitudinal Cline between Original and Recently Colonized Habitat in a
-Butterfly. </span> <span style="font-style: italic;"
-class="citation_journal_title">PLoS ONE</span><span
-class="citation_issue">5(11):</span> <span
-class="citation_start_page">e13810.</span> <span
-class="citation_doi">doi:10.1371/journal.pone.0013810<br>
-</span></p>
-
-<p class="intro">[27] Lagisz, M., Port, G. and Wolff, K. (2011) Living in a
-jar: genetic variation and differentiation among laboratory strains of the red
-flour beetle. <span style="font-style: italic;">Journal of Applied
-Entomology</span>, no. doi: 10.1111/j.1439-0418.2010.01593.x<br>
-</p>
-
-<p class="authors">[28] Jessica A. Satkoski Trask, Ripan S. Malhi, Sree
-Kanthaswamy, Jesse Johnson, Wendy T. Garnica, Venkat S. Malladi and David Glenn
-Smith.(2011) The effect of SNP discovery method and sample size on estimation
-of population genetic data for Chinese and Indian rhesus macaques (<i>Macaca
-mulatta</i>). <span style="font-style: italic;">Primates: </span><span
-class="doi"><span class="label">DOI:</span> <span
-class="value">10.1007/s10329-010-0232-4<br>
-</span></span></p>
-
-<p class="auth_list">[29] HELYAR, S. J., HEMMER-HANSEN, J., BEKKEVOLD, D.,
-TAYLOR, M. I., OGDEN, R., LIMBORG, M. T., CARIANI, A., MAES, G. E., DIOPERE,
-E., CARVALHO, G. R. and NIELSEN, E. E. , Application of SNPs for population
-genetics of nonmodel organisms: new opportunities and challenges. <span
-style="font-style: italic;">Molecular Ecology Resources</span>, no.
-doi: 10.1111/j.1755-0998.2010.02943.x<br>
-</p>
-
-<p class="auth_list">[30] LEVENTE KISS,ALEXANDRA PINTYE,GABOR M. KOVACS, TUNDE
-JANKOVICS, MICHAEL C. FONTAINE, NICK HARVEY, XIANGMING XU, PHILIPPE C. NICOT,
-MARC<br>
-BARDIN, JACQUI A. SHYKOFF and TATIANA GIRAUD (<span
-style="font-style: italic;">in press</span>) Temporal isolation explains
-host-related genetic differentiation in a group of widespread mycoparasitic
-fungi. <span style="font-style: italic;">Molecular Ecology</span>.</p>
-
-<p class="auth_list">[31] CLARK, L. V. and JASIENIUK, M. , <span
-class="smallCaps">polysat</span>: an R package for polyploid microsatellite
-analysis. Molecular Ecology Resources, no.
-doi: 10.1111/j.1755-0998.2011.02985.<br>
-</p>
-
-<p id="citation">[32] ALS, T. D., HANSEN, M. M., MAES, G. E., CASTONGUAY, M.,
-RIEMANN, L., AARESTRUP, K., MUNK, P., SPARHOLT, H., HANEL, R. and BERNATCHEZ,
-L. , All roads lead to home: panmixia of European eel in the Sargasso Sea.
-<span style="font-style: italic;">Molecular Ecology</span>.
-doi: 10.1111/j.1365-294X.2011.05011.x<br>
-</p>
-
-<p class="intro"><span class="citation_author">[33] Balmer O, </span> <span
-class="citation_author">Beadell JS, </span> <span
-class="citation_author">Gibson W, </span> <span class="citation_author">Caccone
-A, </span> <span class="citation_date">2011</span> <span
-class="citation_article_title">Phylogeography and Taxonomy of <i>Trypanosoma
-brucei</i>. </span> <span class="citation_journal_title">PLoS Negl Trop
-Dis</span><span class="citation_issue">5(2):</span> <span
-class="citation_start_page">e961.</span> <span
-class="citation_doi">doi:10.1371/journal.pntd.0000961<br>
-</span></p>
-
-<p class="intro">[34] THIERRY, M., BECKER, N., HAJRI, A., REYNAUD, B., LETT,
-J.-M. and DELATTE, H. (2011), Symbiont diversity and non-random hybridization
-among indigenous (Ms) and invasive (B) biotypes of <em>Bemisia tabaci</em>.
-Molecular Ecology, 20: no. doi: 10.1111/j.1365-294X.2011.05087.x<br>
-</p>
-
-<p class="intro">[35] HORNE, J. B., MOMIGLIANO, P., WELCH, D. J., NEWMAN, S. J.
-and Van HERWERDEN, L. (2011), Limited ecological population connectivity
-suggests low demands on self-recruitment in a tropical inshore marine fish
-(<em>Eleutheronema tetradactylum</em>: Polynemidae). Molecular Ecology, 20: no.
-doi: 10.1111/j.1365-294X.2011.05097.x<br>
-</p>
-
-<p class="intro"><span class="citation_author">[36] Simwami SP, </span> <span
-class="citation_author">Khayhan K, </span> <span class="citation_author">Henk
-DA, </span> <span class="citation_author">Aanensen DM, </span> <span
-class="citation_author">Boekhout T, </span> <span class="citation_author">et
-al. </span> <span class="citation_date">2011</span> <span
-class="citation_article_title">Low Diversity <i>Cryptococcus neoformans</i>
-Variety <i>grubii</i> Multilocus Sequence Types from Thailand Are Consistent
-with an Ancestral African Origin.</span> <span
-class="citation_journal_title">PLoS Pathog</span><span
-class="citation_issue">7(4):</span> <span
-class="citation_start_page">e1001343.</span> <span
-class="citation_doi">doi:10.1371/journal.ppat.1001343<br>
-</span></p>
-
-<p class="intro">[37] CRISCIONE, C. D., VILAS, R., PANIAGUA, E. and BLOUIN, M.
-S. (2011), More than meets the eye: detecting cryptic microgeographic
-population structure in a parasite with a complex life cycle. Molecular
-Ecology, 20: no. doi: 10.1111/j.1365-294X.2011.05113.x<span
-style="font-weight: bold;"><br>
-</span></p>
-
-<p class="intro">[38] A. Mercier, D. Ajzenberg, S.<span
-class="hit">Devillard</span>, M.P. Demar, B. de Thoisy, H. Bonnabau, F.
-Collinet, R. Boukhari, D. Blanchet, S. Simon, B. Carme, M.-L. Dardé (<span
-style="font-style: italic;">in press</span>) Human impact on genetic diversity
-of <span style="font-style: italic;">Toxoplasma gondii</span>: Example of the
-anthropized environment from French Guiana. <br>
-Infection, Genetics and Evolution.<br>
-</p>
-
-<p class="intro">[39] MONTANO, V., FERRI, G., MARCARI, V., BATINI, C., ANYAELE,
-O., DESTRO-BISOL, G. and COMAS, D. (2011), The Bantu expansion revisited: a new
-analysis of Y chromosome variation in Central Western Africa. Molecular
-Ecology, 20: no. doi: 10.1111/j.1365-294X.2011.05130.x<br>
-</p>
-
-<p class="intro">[40] GAUTIER, M. and NAVES, M. (2011), Footprints of selection
-in the ancestral admixture of a New World Creole cattle breed. Molecular
-Ecology, 20: no. doi: 10.1111/j.1365-294X.2011.05163.x<br>
-</p>
-
-<p class="intro">[41] Šingliarová, Barbora ; Chrtek, Jindřich ;
-Plačková, Ivana ;Mráz, Patrik (2001) Allozyme Variation in Diploid,
-Polyploid and Mixed-Ploidy Populations of the <span
-style="font-style: italic;">Pilosella alpicola</span> Group (Asteraceae):
-Relation to Morphology, Origin of Polyploids and Breeding System . Folia
-Geobotanica: 1-24. Doi: 10.1007/s12224-011-9102-0<br>
-</p>
-
-<p class="intro">[42] Penner, J., Wegmann, M., Hillers, A., Schmidt, M. and
-Rödel, M.-O. (2011), A hotspot revisited – a biogeographical analysis of
-West African amphibians. Diversity and Distributions.
-doi: 10.1111/j.1472-4642.2011.00801.x<br>
-</p>
-
-<p class="intro">[43] SCHMIDT, D. J., BOND, N. R., ADAMS, M. and HUGHES, J. M.
-(2011), Cytonuclear evidence for hybridogenetic reproduction in natural
-populations of the Australian carp gudgeon (<em>Hypseleotris</em>: Eleotridae).
-Molecular Ecology. doi: 10.1111/j.1365-294X.2011.05206.x<br>
-</p>
-
-<p class="intro">[44] Kinziger, A. P., Nakamoto, R. J., Anderson, E. C. and
-Harvey, B. C. , Small founding number and low genetic diversity in an
-introduced species exhibiting limited invasion success (speckled dace,
-<em>Rhinichthys osculus</em>). Ecology and Evolution. doi: 10.1002/ece3.8<br>
-</p>
-
-<p class="intro">[45] KANNO, Y., VOKOUN, J. C. and LETCHER, B. H. (2011),
-Fine-scale population structure and riverscape genetics of brook trout
-(Salvelinus fontinalis) distributed continuously along headwater channel
-networks. Molecular Ecology. doi: 10.1111/j.1365-294X.2011.05210.x<br>
-</p>
-
-<p class="intro">[46] ROW, J. R., BROOKS, R. J., MacKINNON, C. A., LAWSON, A.,
-CROTHER, B. I., WHITE, M. and LOUGHEED, S. C. (2011), Approximate Bayesian
-computation reveals the factors that influence genetic diversity and population
-structure of foxsnakes. Journal of Evolutionary Biology. doi:
-10.1111/j.1420-9101.2011.02362.x<br>
-</p>
-
-<p class="intro">[47] C. A. Davies, E. M. Gosling, A. Was, D. Brophy and N.
-Tysklind (2011) Microsatellite analysis of albacore tuna (Thunnus alalunga):
-population genetic structure in the North-East Atlantic Ocean and Mediterranean
-Sea. Marine Biology. DOI: 10.1007/s00227-011-1772-x<br>
-</p>
-
-<p class="intro">[48] Hugo R. Oliveira, Huw Jones, Fiona Leigh, Diane L.
-Lister, Martin K. Jones and Leonor Peña-Chocarro (2011) Phylogeography of
-einkorn landraces in the Mediterranean basin and Central Europe: population
-structure and cultivation history. ARCHAEOLOGICAL AND ANTHROPOLOGICAL SCIENCES.
-DOI: 10.1007/s12520-011-0076-x<br>
-</p>
-
-<p class="intro">[49] DAILIANIS, T., TSIGENOPOULOS, C. S., DOUNAS, C. and
-VOULTSIADOU, E. (2011), Genetic diversity of the imperilled bath sponge Spongia
-officinalis Linnaeus, 1759 across the Mediterranean Sea: patterns of population
-differentiation and implications for taxonomy and conservation. Molecular
-Ecology. doi: 10.1111/j.1365-294X.2011.05222.x<br>
-</p>
-
-<p class="intro">[50] Say, L., Devillard, S., Léger, F., Pontier, D. and
-Ruette, S. (2011), Distribution and spatial genetic structure of European
-wildcat in France. Animal Conservation. doi:
-10.1111/j.1469-1795.2011.00478.x<br>
-</p>
-
-<p class="intro"></p>
-
-<p class="intro">[51]* PALERO, F., ABELLÓ, P., MACPHERSON, E., BEAUMONT, M. and
-PASCUAL, M. (2011), Effect of oceanographic barriers and overfishing on the
-population genetic structure of the European spiny lobster (<span
-style="font-style: italic;">Palinurus elephas</span>). Biological Journal of
-the Linnean Society. doi: 10.1111/j.1095-8312.2011.01728.x<br>
-</p>
-[52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L, Taglioli L, Pettener D,
-Ghaderi A, Romeo G, Luiselli D (2011) Discordant Patterns of mtDNA and
-Ethno-Linguistic Variation in 14 Iranian Ethnic Groups. Hum Hered 2011;72:73-84
-(DOI: 10.1159/000330166) <br>
-<br>
-[53] Mónica Balzarini, Ingrid Teich, Cecilia Bruno, Andrea Peña (2011) Making
-genetic biodiversity measurable: a review of statistical multivariate methods
-to study variability at gene level. Rev. FCA UNCUYO 43 (1): 261-275. ISSN
-0370-4661.<br>
-<br>
-[54] HENK, D. A., EAGLE, C. E., BROWN, K., VAN DEN BERG, M. A., DYER, P. S.,
-PETERSON, S. W. and FISHER, M. C. (2011), Speciation despite globally
-overlapping distributions in Penicilm chrysogenum: the population genetics of
-Alexander Fleming’s lucky fungus. Molecular Ecology. doi:
-10.1111/j.1365-294X.2011.05244.x<br>
-<br>
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