[adegenet-commits] r1061 - www

Fri Jan 4 11:39:45 CET 2013

Author: jombart
Date: 2013-01-04 11:39:45 +0100 (Fri, 04 Jan 2013)
New Revision: 1061

Modified:
   www/literature.html
Log:
+3 refs

Modified: www/literature.html
===================================================================

--- www/literature.html	2013-01-04 10:33:40 UTC (rev 1060)
+++ www/literature.html	2013-01-04 10:39:45 UTC (rev 1061)
@@ -58,7 +58,8 @@
 the
 
 
-bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span> <br
+bublisher's
+website</a><span style="color: rgb(0, 153, 0);">]</span> <br
  style="color: rgb(0, 153, 0);">
 <br>
 <br style="color: rgb(0, 153, 0);">
@@ -75,28 +76,27 @@
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy2008130a.pdf">link</a>
 to the journal's pdf - <a target="_new"
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
-
-
 abstract</a>]<br>
 <br>
 - the paper presenting the <span style="font-style: italic;">spatial
 principal component analysis</span> (<span style="font-style: italic;">sPCA</span>,
 
-function <span style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
+function
+<span style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
 
-global and local tests (<span
+global
+and local tests (<span
  style="font-family: monospace; color: rgb(255, 0, 0);">global.rtest</span>
 and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
 <b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b> </b>(2008)<b> </b>Revealing
-cryptic spatial patterns in genetic variability by a new multivariate
+cryptic
+spatial patterns in genetic variability by a new multivariate
 method.  <span style="font-style: italic;">Heredity</span> <span
  style="font-weight: bold;">101</span>: 92-103. doi:
 10.1038/hdy.2008.34 [<a
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
 on the journal's website - <a target="_new"
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
-
-
 abstract</a>]<br>
 </div>
 <br>
@@ -110,7 +110,8 @@
 simulations
 
 
-of genealoies of haplotypes (<span
+of
+genealoies of haplotypes (<span
  style="font-family: monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
 <b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010) Reconstructing
 disease outbreaks from genetic data: a graph approach. <span
@@ -122,8 +123,8 @@
 of
 
 
-Principal Components</span> (<span style="font-style: italic;">DAPC</span>,
-
+Principal
+Components</span> (<span style="font-style: italic;">DAPC</span>,
 functions <span style="font-family: monospace;"><span
  style="color: rgb(255, 0, 0);">find.clusters</span> </span>and <span
  style="font-family: monospace; color: rgb(255, 0, 0);">dapc</span>):<br>
@@ -213,7 +214,8 @@
 Molecular data provide strong evidence of natural hybridization between
 native and introduced lineages of <i>Phragmites australis</i> in North
 America. <span style="font-style: italic;">Biological Invasions</span>.
-doi: 10.1007/s10530-010-9699-6.<br>
+doi:
+10.1007/s10530-010-9699-6.<br>
 <br>
 [12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL, T. NHU
 VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI, J.-C. MAILLARD
@@ -270,7 +272,8 @@
  class="surname">Lougheed (2010)</span></span> Discordant patterns of
 population structure for two co-distributed snake species across a
 fragmented Ontario landscape. <span style="font-style: italic;">Diversity
-and Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
+and
+Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
 <br>
 [17] </span><span class="name"><span class="forenames">Francisco</span>
 <span class="surname">Balao</span><sup><nobr></nobr></sup></span>, <span
@@ -300,7 +303,8 @@
  style="font-style: italic;">Animal Genetics </span><span
  style="font-weight: bold;">41</span>: 47-63.<br>
  </span><span class="authors"><span style="white-space: nowrap;">[20]
-Denis Laloë</span>, <span style="white-space: nowrap;">Katayoun
+Denis
+Laloë</span>, <span style="white-space: nowrap;">Katayoun
 Moazami-Goudarzi</span>, <span style="white-space: nowrap;">Johannes
 A. Lenstra</span>, <span style="white-space: nowrap;">Paolo Ajmone
 Marsan</span>, <span style="white-space: nowrap;">Pedro Azor</span>, <span
@@ -328,7 +332,8 @@
  class="citation_author">Laloë D, </span> <span
  class="citation_author">Moazami-Goudarzi K, </span> <span
  class="citation_date">2010</span> <span class="citation_article_title">Insights
-into the Genetic History of French Cattle from Dense SNP Data on 47
+into
+the Genetic History of French Cattle from Dense SNP Data on 47
 Worldwide Breeds. </span> <span style="font-style: italic;"
  class="citation_journal_title">PLoS ONE</span><span
  class="citation_issue"> <span style="font-weight: bold;">5(9)</span>:</span>
@@ -355,7 +360,8 @@
 <p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J., ROSSI,
 J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient allochronic
 speciation in the pine processionary moth (<em>Thaumetopoea pityocampa</em>,
-Lepidoptera, Notodontidae). <span style="font-style: italic;">Journal
+Lepidoptera,
+Notodontidae). <span style="font-style: italic;">Journal
 of Evolutionary Biology</span>, no.
 doi: 10.1111/j.1420-9101.2010.02147.x<br>
 </p>
@@ -368,7 +374,8 @@
 <p class="intro">[26] <span class="citation_author">Vandewoestijne S, </span>
 <span class="citation_author">Van Dyck H, </span> <span
  class="citation_date">2010</span> <span class="citation_article_title">Population
-Genetic Differences along a Latitudinal Cline between Original and
+Genetic
+Differences along a Latitudinal Cline between Original and
 Recently Colonized Habitat in a Butterfly. </span> <span
  style="font-style: italic;" class="citation_journal_title">PLoS ONE</span><span
  class="citation_issue"> 5(11):</span> <span
@@ -377,7 +384,8 @@
 <p class="intro">[27] Lagisz, M., Port, G. and Wolff, K. (2011) Living
 in a jar: genetic variation and differentiation among laboratory
 strains of the red flour beetle. <span style="font-style: italic;">Journal
-of Applied Entomology</span>, no.
+of
+Applied Entomology</span>, no.
 doi: 10.1111/j.1439-0418.2010.01593.x<br>
 </p>
 <p class="authors">[28] Jessica A. Satkoski Trask, Ripan S. Malhi, Sree
@@ -419,7 +427,8 @@
  class="citation_author">Gibson W, </span> <span
  class="citation_author">Caccone A, </span> <span
  class="citation_date">2011</span> <span class="citation_article_title">Phylogeography
-and Taxonomy of <i>Trypanosoma brucei</i>. </span> <span
+and
+Taxonomy of <i>Trypanosoma brucei</i>. </span> <span
  class="citation_journal_title">PLoS Negl Trop Dis</span><span
  class="citation_issue"> 5(2):</span> <span class="citation_start_page">e961.</span>
 <span class="citation_doi">doi:10.1371/journal.pntd.0000961<br>
@@ -463,7 +472,8 @@
  style="font-style: italic;">in press</span>) Human impact on genetic
 diversity of <span style="font-style: italic;">Toxoplasma gondii</span>:
 
-Example of the anthropized environment from French Guiana. <br>
+Example
+of the anthropized environment from French Guiana. <br>
 Infection, Genetics and Evolution.<br>
 </p>
 <p class="intro">[39] MONTANO, V., FERRI, G., MARCARI, V., BATINI, C.,
@@ -492,7 +502,8 @@
 <p class="intro">[43] SCHMIDT, D. J., BOND, N. R., ADAMS, M. and
 HUGHES, J. M. (2011), Cytonuclear evidence for hybridogenetic
 reproduction in natural populations of the Australian carp gudgeon (<em>Hypseleotris</em>:
-Eleotridae). Molecular Ecology.
+Eleotridae).
+Molecular Ecology.
 doi: 10.1111/j.1365-294X.2011.05206.x<br>
 </p>
 <p class="intro">[44] Kinziger, A. P., Nakamoto, R. J., Anderson, E. C.
@@ -544,7 +555,8 @@
 and overfishing on the population genetic structure of the European
 spiny lobster (<span style="font-style: italic;">Palinurus elephas</span>).
 
-Biological Journal of the Linnean Society. doi:
+Biological
+Journal of the Linnean Society. doi:
 10.1111/j.1095-8312.2011.01728.x<br>
 </p>
 [52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L, Taglioli L,
@@ -628,7 +640,8 @@
 [67] R.M. Fewster, S.D. Miller, and J. Ritchie (2011) DNA profiling – a
 management tool for rat eradication. Pages 426-431 In: Veitch, C. R.;
 Clout, M. N. and Towns, D. R. (eds.). <span style="font-style: italic;">Island
-invasives: eradication and management</span>. 426 Gland, Switzerland.<br>
+invasives:
+eradication and management</span>. 426 Gland, Switzerland.<br>
 <br>
 [68] Monteil, C. L., Guilbaud, C., Glaux, C., Lafolie, F., Soubeyrand,
 S. and Morris, C. E. (2011), Emigration of the plant pathogen
@@ -1003,8 +1016,23 @@
 microsatellite analysis of metacentric chromosomes. Heredity. doi:
 10.1038/hdy.2012.107<br>
 <br>
+[138]* Tõnu Esko et al (2012) Genetic characterization of
+northeastern Italian population isolates in the context of broader
+European genetic diversity. European Journal of Human Genetics. doi:
+10.1038/ejhg.2012.229<br>
 <br>
+[139]* Hardion, Laurent; Verlaque, Régine; Baumel, Alex; Juin,
+Marianick; Vila, Bruno (2012) Revised systematics of Mediterranean
+Arundo (Poaceae) based on AFLP fingerprints and morphology. Taxon 61:
+1217-1226(10)<br>
 <br>
+[140] Hughes J, Allen RC, Baguelin M, Hampson K, Baillie GJ, et al.
+(2012) Transmission of Equine Influenza Virus during an Outbreak Is
+Characterized by Frequent Mixed Infections and Loose Transmission
+Bottlenecks. PLoS Pathog 8(12): e1003081.
+doi:10.1371/journal.ppat.1003081<br>
+<br>
+<br>
 <p class="intro">* adegenet not or wrongly cited, but actually used in
 the paper. <br>
 </p>

