[adegenet-commits] r1015 - www

Mon Jul 9 11:49:53 CEST 2012

Author: jombart
Date: 2012-07-09 11:49:52 +0200 (Mon, 09 Jul 2012)
New Revision: 1015

Modified:
   www/literature.html
Log:
+1ref


Modified: www/literature.html
===================================================================

--- www/literature.html	2012-07-05 10:23:28 UTC (rev 1014)
+++ www/literature.html	2012-07-09 09:49:52 UTC (rev 1015)
@@ -56,7 +56,8 @@
 
 
 
-the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
+the
+bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
 <img style="width: 80px; height: 37px;" alt="" src="images/new.png"><br
  style="color: rgb(0, 153, 0);">
 <br>
@@ -74,29 +75,26 @@
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy2008130a.pdf">link</a>
 to the journal's pdf - <a target="_new"
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
-
-
-
 abstract</a>]<br>
 <br>
 - the paper presenting the <span style="font-style: italic;">spatial
 principal component analysis</span> (<span style="font-style: italic;">sPCA</span>,
 
-function <span style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
-global and local tests (<span
+function
+<span style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
+global
+and local tests (<span
  style="font-family: monospace; color: rgb(255, 0, 0);">global.rtest</span>
 and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
 <b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b> </b>(2008)<b> </b>Revealing
-cryptic spatial patterns in genetic variability by a new multivariate
+cryptic
+spatial patterns in genetic variability by a new multivariate
 method.  <span style="font-style: italic;">Heredity</span> <span
  style="font-weight: bold;">101</span>: 92-103. doi:
 10.1038/hdy.2008.34 [<a
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
 on the journal's website - <a target="_new"
  href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
-
-
-
 abstract</a>]<br>
 </div>
 <br>
@@ -112,7 +110,8 @@
 
 
 
-simulations of genealoies of haplotypes (<span
+simulations
+of genealoies of haplotypes (<span
  style="font-family: monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
 <b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010) Reconstructing
 disease outbreaks from genetic data: a graph approach. <span
@@ -126,8 +125,10 @@
 
 
 
-of Principal Components</span> (<span style="font-style: italic;">DAPC</span>,
-functions <span style="font-family: monospace;"><span
+of
+Principal Components</span> (<span style="font-style: italic;">DAPC</span>,
+functions
+<span style="font-family: monospace;"><span
  style="color: rgb(255, 0, 0);">find.clusters</span> </span>and <span
  style="font-family: monospace; color: rgb(255, 0, 0);">dapc</span>):<br>
 <b>Jombart T</b>, Devillard S and Balloux F <b> </b>(2010)
@@ -216,7 +217,8 @@
 Molecular data provide strong evidence of natural hybridization between
 native and introduced lineages of <i>Phragmites australis</i> in North
 America. <span style="font-style: italic;">Biological Invasions</span>.
-doi: 10.1007/s10530-010-9699-6.<br>
+doi:
+10.1007/s10530-010-9699-6.<br>
 <br>
 [12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL, T. NHU
 VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI, J.-C. MAILLARD
@@ -273,7 +275,8 @@
  class="surname">Lougheed (2010)</span></span> Discordant patterns of
 population structure for two co-distributed snake species across a
 fragmented Ontario landscape. <span style="font-style: italic;">Diversity
-and Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
+and
+Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
 <br>
 [17] </span><span class="name"><span class="forenames">Francisco</span>
 <span class="surname">Balao</span><sup><nobr></nobr></sup></span>, <span
@@ -303,7 +306,8 @@
  style="font-style: italic;">Animal Genetics </span><span
  style="font-weight: bold;">41</span>: 47-63.<br>
  </span><span class="authors"><span style="white-space: nowrap;">[20]
-Denis Laloë</span>, <span style="white-space: nowrap;">Katayoun
+Denis
+Laloë</span>, <span style="white-space: nowrap;">Katayoun
 Moazami-Goudarzi</span>, <span style="white-space: nowrap;">Johannes
 A. Lenstra</span>, <span style="white-space: nowrap;">Paolo Ajmone
 Marsan</span>, <span style="white-space: nowrap;">Pedro Azor</span>, <span
@@ -331,7 +335,8 @@
  class="citation_author">Laloë D, </span> <span
  class="citation_author">Moazami-Goudarzi K, </span> <span
  class="citation_date">2010</span> <span class="citation_article_title">Insights
-into the Genetic History of French Cattle from Dense SNP Data on 47
+into
+the Genetic History of French Cattle from Dense SNP Data on 47
 Worldwide Breeds. </span> <span style="font-style: italic;"
  class="citation_journal_title">PLoS ONE</span><span
  class="citation_issue"> <span style="font-weight: bold;">5(9)</span>:</span>
@@ -358,7 +363,8 @@
 <p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J., ROSSI,
 J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient allochronic
 speciation in the pine processionary moth (<em>Thaumetopoea pityocampa</em>,
-Lepidoptera, Notodontidae). <span style="font-style: italic;">Journal
+Lepidoptera,
+Notodontidae). <span style="font-style: italic;">Journal
 of Evolutionary Biology</span>, no.
 doi: 10.1111/j.1420-9101.2010.02147.x<br>
 </p>
@@ -371,7 +377,8 @@
 <p class="intro">[26] <span class="citation_author">Vandewoestijne S, </span>
 <span class="citation_author">Van Dyck H, </span> <span
  class="citation_date">2010</span> <span class="citation_article_title">Population
-Genetic Differences along a Latitudinal Cline between Original and
+Genetic
+Differences along a Latitudinal Cline between Original and
 Recently Colonized Habitat in a Butterfly. </span> <span
  style="font-style: italic;" class="citation_journal_title">PLoS ONE</span><span
  class="citation_issue"> 5(11):</span> <span
@@ -380,7 +387,8 @@
 <p class="intro">[27] Lagisz, M., Port, G. and Wolff, K. (2011) Living
 in a jar: genetic variation and differentiation among laboratory
 strains of the red flour beetle. <span style="font-style: italic;">Journal
-of Applied Entomology</span>, no.
+of
+Applied Entomology</span>, no.
 doi: 10.1111/j.1439-0418.2010.01593.x<br>
 </p>
 <p class="authors">[28] Jessica A. Satkoski Trask, Ripan S. Malhi, Sree
@@ -422,7 +430,8 @@
  class="citation_author">Gibson W, </span> <span
  class="citation_author">Caccone A, </span> <span
  class="citation_date">2011</span> <span class="citation_article_title">Phylogeography
-and Taxonomy of <i>Trypanosoma brucei</i>. </span> <span
+and
+Taxonomy of <i>Trypanosoma brucei</i>. </span> <span
  class="citation_journal_title">PLoS Negl Trop Dis</span><span
  class="citation_issue"> 5(2):</span> <span class="citation_start_page">e961.</span>
 <span class="citation_doi">doi:10.1371/journal.pntd.0000961<br>
@@ -466,7 +475,8 @@
  style="font-style: italic;">in press</span>) Human impact on genetic
 diversity of <span style="font-style: italic;">Toxoplasma gondii</span>:
 
-Example of the anthropized environment from French Guiana. <br>
+Example
+of the anthropized environment from French Guiana. <br>
 Infection, Genetics and Evolution.<br>
 </p>
 <p class="intro">[39] MONTANO, V., FERRI, G., MARCARI, V., BATINI, C.,
@@ -495,7 +505,8 @@
 <p class="intro">[43] SCHMIDT, D. J., BOND, N. R., ADAMS, M. and
 HUGHES, J. M. (2011), Cytonuclear evidence for hybridogenetic
 reproduction in natural populations of the Australian carp gudgeon (<em>Hypseleotris</em>:
-Eleotridae). Molecular Ecology.
+Eleotridae).
+Molecular Ecology.
 doi: 10.1111/j.1365-294X.2011.05206.x<br>
 </p>
 <p class="intro">[44] Kinziger, A. P., Nakamoto, R. J., Anderson, E. C.
@@ -547,7 +558,8 @@
 and overfishing on the population genetic structure of the European
 spiny lobster (<span style="font-style: italic;">Palinurus elephas</span>).
 
-Biological Journal of the Linnean Society. doi:
+Biological
+Journal of the Linnean Society. doi:
 10.1111/j.1095-8312.2011.01728.x<br>
 </p>
 [52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L, Taglioli L,
@@ -631,7 +643,8 @@
 [67] R.M. Fewster, S.D. Miller, and J. Ritchie (2011) DNA profiling – a
 management tool for rat eradication. Pages 426-431 In: Veitch, C. R.;
 Clout, M. N. and Towns, D. R. (eds.). <span style="font-style: italic;">Island
-invasives: eradication and management</span>. 426 Gland, Switzerland.<br>
+invasives:
+eradication and management</span>. 426 Gland, Switzerland.<br>
 <br>
 [68] Monteil, C. L., Guilbaud, C., Glaux, C., Lafolie, F., Soubeyrand,
 S. and Morris, C. E. (2011), Emigration of the plant pathogen
@@ -817,7 +830,12 @@
 (2012), Genome-wide single nucleotide polymorphism analysis reveals
 recent genetic introgression from domestic pigs into Northwest European
 wild boar populations. Molecular Ecology. doi:
-10.1111/j.1365-294X.2012.05670.x<br>
+10.1111/j.1365-294X.2012.05670.x</p>
+<p class="intro">[102] KANTHASWAMY, S., TRASK, J. S., ROSS, C. T., KOU,
+A., HOUGHTON, P., SMITH, D. G. and LERCHE, N. (2012), A Large-Scale
+SNP-Based Genomic Admixture Analysis of the Captive Rhesus Macaque
+Colony at the California National Primate Research Center. Am. J.
+Primatol., 74: 747–757. doi: 10.1002/ajp.22025<br>
 <br>
 </p>
 <p class="intro">* adegenet not or wrongly cited, but actually used in

