[adegenet-commits] r1057 - www

Wed Dec 5 16:43:03 CET 2012

Author: jombart
Date: 2012-12-05 16:43:02 +0100 (Wed, 05 Dec 2012)
New Revision: 1057

Modified:
   www/literature.html
Log:
+2 ref

Modified: www/literature.html
===================================================================

--- www/literature.html	2012-11-22 10:31:49 UTC (rev 1056)
+++ www/literature.html	2012-12-05 15:43:02 UTC (rev 1057)
@@ -53,7 +53,8 @@
  href="http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr521">link
 
 to
-the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
+the
+bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
 <br style="color: rgb(0, 153, 0);">
 <br>
 <br style="color: rgb(0, 153, 0);">
@@ -74,18 +75,19 @@
 <br>
 - the paper presenting the <span style="font-style: italic;">spatial
 principal component analysis</span> (<span style="font-style: italic;">sPCA</span>,
-
 function
 <span style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
 
 global
-and local tests (<span
+and
+local tests (<span
  style="font-family: monospace; color: rgb(255, 0, 0);">global.rtest</span>
 and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
 <b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b> </b>(2008)<b> </b>Revealing
 
 cryptic
-spatial patterns in genetic variability by a new multivariate
+spatial
+patterns in genetic variability by a new multivariate
 method.  <span style="font-style: italic;">Heredity</span> <span
  style="font-weight: bold;">101</span>: 92-103. doi:
 10.1038/hdy.2008.34 [<a
@@ -102,7 +104,8 @@
 (<span style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
 
 and
-simulations of genealoies of haplotypes (<span
+simulations
+of genealoies of haplotypes (<span
  style="font-family: monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
 <b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010) Reconstructing
 disease outbreaks from genetic data: a graph approach. <span
@@ -111,8 +114,10 @@
 - the paper introducing the <span style="font-style: italic;">Discriminant
 
 Analysis
-of Principal Components</span> (<span style="font-style: italic;">DAPC</span>,
-functions <span style="font-family: monospace;"><span
+of
+Principal Components</span> (<span style="font-style: italic;">DAPC</span>,
+functions
+<span style="font-family: monospace;"><span
  style="color: rgb(255, 0, 0);">find.clusters</span>
 </span>and <span style="font-family: monospace; color: rgb(255, 0, 0);">dapc</span>):<br>
 <b>Jombart T</b>, Devillard S and Balloux F <b> </b>(2010)
@@ -201,7 +206,6 @@
 Molecular data provide strong evidence of natural hybridization between
 native and introduced lineages of <i>Phragmites australis</i> in North
 America. <span style="font-style: italic;">Biological Invasions</span>.
-
 doi:
 10.1007/s10530-010-9699-6.<br>
 <br>
@@ -260,7 +264,6 @@
  class="surname">Lougheed (2010)</span></span> Discordant patterns of
 population structure for two co-distributed snake species across a
 fragmented Ontario landscape. <span style="font-style: italic;">Diversity
-
 and
 Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
 <br>
@@ -292,7 +295,6 @@
  style="font-style: italic;">Animal Genetics </span><span
  style="font-weight: bold;">41</span>: 47-63.<br>
  </span><span class="authors"><span style="white-space: nowrap;">[20]
-
 Denis
 Laloë</span>, <span style="white-space: nowrap;">Katayoun
 Moazami-Goudarzi</span>, <span style="white-space: nowrap;">Johannes
@@ -324,7 +326,8 @@
  class="citation_date">2010</span> <span class="citation_article_title">Insights
 
 into
-the Genetic History of French Cattle from Dense SNP Data on 47
+the
+Genetic History of French Cattle from Dense SNP Data on 47
 Worldwide Breeds. </span> <span style="font-style: italic;"
  class="citation_journal_title">PLoS ONE</span><span
  class="citation_issue"> <span style="font-weight: bold;">5(9)</span>:</span>
@@ -351,7 +354,8 @@
 speciation in the pine processionary moth (<em>Thaumetopoea pityocampa</em>,
 
 Lepidoptera,
-Notodontidae). <span style="font-style: italic;">Journal
+Notodontidae).
+<span style="font-style: italic;">Journal
 of Evolutionary Biology</span>, no.
 doi: 10.1111/j.1420-9101.2010.02147.x<br>
 </p>
@@ -366,7 +370,8 @@
  class="citation_date">2010</span> <span class="citation_article_title">Population
 
 Genetic
-Differences along a Latitudinal Cline between Original and
+Differences
+along a Latitudinal Cline between Original and
 Recently Colonized Habitat in a Butterfly. </span> <span
  style="font-style: italic;" class="citation_journal_title">PLoS ONE</span><span
  class="citation_issue"> 5(11):</span> <span
@@ -377,7 +382,8 @@
 strains of the red flour beetle. <span style="font-style: italic;">Journal
 
 of
-Applied Entomology</span>, no.
+Applied
+Entomology</span>, no.
 doi: 10.1111/j.1439-0418.2010.01593.x<br>
 </p>
 <p class="authors">[28] Jessica A. Satkoski Trask, Ripan S. Malhi, Sree
@@ -421,7 +427,8 @@
  class="citation_date">2011</span> <span class="citation_article_title">Phylogeography
 
 and
-Taxonomy of <i>Trypanosoma brucei</i>. </span> <span
+Taxonomy
+of <i>Trypanosoma brucei</i>. </span> <span
  class="citation_journal_title">PLoS Negl Trop Dis</span><span
  class="citation_issue"> 5(2):</span> <span class="citation_start_page">e961.</span>
 <span class="citation_doi">doi:10.1371/journal.pntd.0000961<br>
@@ -466,7 +473,8 @@
 diversity of <span style="font-style: italic;">Toxoplasma gondii</span>:
 
 Example
-of the anthropized environment from French Guiana. <br>
+of
+the anthropized environment from French Guiana. <br>
 Infection, Genetics and Evolution.<br>
 </p>
 <p class="intro">[39] MONTANO, V., FERRI, G., MARCARI, V., BATINI, C.,
@@ -497,7 +505,8 @@
 reproduction in natural populations of the Australian carp gudgeon (<em>Hypseleotris</em>:
 
 Eleotridae).
-Molecular Ecology.
+Molecular
+Ecology.
 doi: 10.1111/j.1365-294X.2011.05206.x<br>
 </p>
 <p class="intro">[44] Kinziger, A. P., Nakamoto, R. J., Anderson, E. C.
@@ -550,7 +559,8 @@
 spiny lobster (<span style="font-style: italic;">Palinurus elephas</span>).
 
 Biological
-Journal of the Linnean Society. doi:
+Journal
+of the Linnean Society. doi:
 10.1111/j.1095-8312.2011.01728.x<br>
 </p>
 [52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L, Taglioli L,
@@ -636,7 +646,8 @@
 Clout, M. N. and Towns, D. R. (eds.). <span style="font-style: italic;">Island
 
 invasives:
-eradication and management</span>. 426 Gland, Switzerland.<br>
+eradication
+and management</span>. 426 Gland, Switzerland.<br>
 <br>
 [68] Monteil, C. L., Guilbaud, C., Glaux, C., Lafolie, F., Soubeyrand,
 S. and Morris, C. E. (2011), Emigration of the plant pathogen
@@ -969,9 +980,15 @@
 Generation of Long-lived Human Plasma Cells. doi:
 10.4049/jimmunol.1103720<br>
 </p>
-<p class="intro"><br>
+<p class="intro">[129]* Sepil, I., Lachish, S. and Sheldon, B. C.
+(2012), Mhc-linked survival and lifetime reproductive success in a wild
+population of great tits. Molecular Ecology. doi: 10.1111/mec.12123<br>
+</p>
+<p class="intro">[130] Béatrice M. Frank, , Philippe V. Baret
+(2012) Simulating brown trout demogenetics in a river/nursery brook
+system: The individual-based model DemGenTrout. Ecological Modelling.</p>
 <br>
-</p>
+<br>
 <p class="intro">* adegenet not or wrongly cited, but actually used in
 the paper. <br>
 </p>

