[adegenet-commits] r1028 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Aug 10 16:54:29 CEST 2012
Author: jombart
Date: 2012-08-10 16:54:29 +0200 (Fri, 10 Aug 2012)
New Revision: 1028
Added:
www/search.html
Modified:
www/contact.html
www/documentation.html
www/marge.html
Log:
Fixing the frame issues in the search engine.
Modified: www/contact.html
===================================================================
--- www/contact.html 2012-08-10 10:37:25 UTC (rev 1027)
+++ www/contact.html 2012-08-10 14:54:29 UTC (rev 1028)
@@ -28,33 +28,15 @@
</span>For all discussions/questions related to adegenet.<br>
- one address: adegenet-forum AT lists DOT r-forge DOT r-project
DOT org<br>
-- to subscribe to this ML, go <a
+- to subscribe to this mailing list, go <a
href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum"
- target="_top">there</a><br>
+ target="_top">here</a><br>
- please read the <a style="font-weight: bold;"
href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum">guidelines</a>
before sending a post<br>
-- use the search engine:<br>
-<center>
-<div style="text-align: left;"></div>
-<!-- <form method="get" action="http://www.google.com/search"> -->
-<!-- <div style="text-align: left;"><\!--<TABLE bgcolor="#FFFFFF"><tr><td>-\-> --><!-- <a href="http://www.google.fr"><img -->
-<!-- src="http://www.google.com/logos/Logo_40wht.gif" alt="Google" --><!-- border="0" align="middle"></a><br> -->
-<!-- </div> --><!-- <div style="text-align: left;"><input name="q" size="31" -->
-<!-- maxlength="255" value="Enter keywords here" type="text"><\!--<INPUT TYPE=hidden name="domains" value="adegenet.r-forge.r-project.org" />-\-><input --><!-- name="as_sitesearch" -->
-<!-- value="lists.r-forge.r-project.org/pipermail/adegenet-forum/" --><!-- type="hidden"> <input name="pbil" value="Google search" type="submit"></div> -->
-<!-- </form> -->
-<form method="get" action="http://www.google.com/search">
- <div style="text-align: left;"><input name="q" size="31"
- maxlength="255" value="Enter keywords here" type="text">
- <input value="Google Search" type="submit"><input name="sitesearch"
- value="adegenet.r-forge.r-project.org" type="radio"> adegenet website
- <input name="sitesearch"
- value="lists.r-forge.r-project.org/pipermail/adegenet-forum/"
- checked="checked" type="radio"> adegenet-forum archives <br>
- </div>
-</form>
-</center>
+- use the <a style="font-weight: bold;" target="_top"
+ href="search.html">search engine</a> to look for information in the
+archives<br>
- alternatively, you can <a
href="http://lists.r-forge.r-project.org/pipermail/adegenet-forum/">browse
the
@@ -71,7 +53,8 @@
genetic
markers
in
-R, use the <a target="_top"
+R,
+use the <a target="_top"
href="https://stat.ethz.ch/mailman/listinfo/r-sig-genetics">R-sig-genetics</a>
mailing list.<br>
<br>
@@ -133,7 +116,8 @@
item called "newtable" on the search list</span></font></font><br>
This is because the package '<span style="font-style: italic;">graph</span>',
on
-which <span style="font-style: italic;">adegenet</span> depends,
+which
+<span style="font-style: italic;">adegenet</span> depends,
has been removed from CRAN. You need to install graph from bioconductor
first, and then install adegenet:<br>
<pre>source("http://bioconductor.org/biocLite.R")<br>biocLite("graph")<span
Modified: www/documentation.html
===================================================================
--- www/documentation.html 2012-08-10 10:37:25 UTC (rev 1027)
+++ www/documentation.html 2012-08-10 14:54:29 UTC (rev 1028)
@@ -32,22 +32,31 @@
distributed with the package include a manual and vignettes. This
website also provides other resources such as lectures and practicals.<br>
<br>
+<span style="font-weight: bold;">To search quickly</span> through these
+resources, use the <a target="_top" href="search.html">search engine</a>.
+<img style="width: 80px; height: 37px;" alt="new" src="images/new.png"><br>
+<br>
+<br>
+<br>
<span style="font-weight: bold; color: rgb(0, 102, 0);">Manuals</span><br>
- the adegenet <span style="font-weight: bold;">manual</span> (<a
href="files/adegenet-manual.pdf">pdf</a>), which compiles all the
manpages of the package.<br>
<br>
+<br>
<span style="color: rgb(0, 102, 0); font-weight: bold;">Tutorials
vignettes </span><br>
- <a href="files/adegenet-basics.pdf"><span style="font-style: italic;">adegenet-basics</span></a>:
-introduction to the package; accessible from R by typing <span
+introduction
+to the package; accessible from R by typing <span
style="font-family: monospace; color: rgb(255, 0, 0);">vignette("adegenet-basics")</span>.<br>
</div>
- - <a
+ - <a
href="files/adegenet-spca.pdf"><span style="font-style: italic;">adegenet-spca</span></a>:
-spatial multivariate analysis using adegenet; includes an introduction
+spatial
+multivariate analysis using adegenet; includes an introduction
to spatial PCA (sPCA); accessible from R by typing <span
style="font-family: monospace; color: rgb(255, 0, 0);">vignette("adegenet-spca")</span>.<br>
<div style="margin-left: 40px;">- <a href="files/adegenet-dapc.pdf"><span
@@ -70,7 +79,6 @@
<br>
- Master 2 "Ecology, Evolution, Biometry", Lyon, France: <a
href="files/talk-E2B.1.0.pdf">talk</a> - <a href="files/TD-E2B.pdf">practical
-
course</a><br>
<br>
- One-week course on Genetic Data Analysis, Bogota, Colombia: <br>
@@ -81,52 +89,41 @@
> <a href="files/day3.1.2.pdf">lecture 3</a>:
spatial genetics<br>
> <a href="files/practical-day1.1.2.pdf">practical
-
1</a> [<a href="files/practical-day1.1.2-allcmd.pdf">version with all
commands</a>]<br>
> <a href="files/practical-day2.1.3.pdf">practical
2</a> [<a href="files/practical-day2.1.3-allcmd.pdf">version with all
commands</a>]<br>
> <a href="files/practical-day3.1.2.pdf">practical
-
3</a><br>
<br>
- MRC methodological session: Introduction to phylogenetics:<br>
> <a href="files/MRCsession2-talk.1.2.pdf">slides</a><br>
> <a href="files/MRC-session2-tuto.1.3.pdf">practical</a><br>
> data (<a href="files/usflu.fasta">DNA sequences</a>,
-
<a href="files/usflu.annot.csv">annotations</a>)<br>
- Imperial College - MSc '<span style="font-style: italic;">Modern
Epidemiology</span>': <span style="font-weight: bold;">Introduction to
phylogenetics</span>.<br>
> <a href="files/MSc-intro-phylo.1.0.pdf">practical</a><br>
> data (<a href="files/usflu.fasta">usflu.fasta</a>,
-
<a href="files/usflu.annot.csv">usflu.annot.csv</a>)<br>
<br>
<br>
-<span style="font-weight: bold; color: rgb(0, 102, 0);">Search engine </span><img
- style="width: 80px; height: 37px;" alt="new" src="images/new.png"><br>
-Use it to make a research on adegenet <span style="font-weight: bold;">website</span>
-or <span style="font-weight: bold;">forum's archives</span>:<br>
-<br>
-<input name="q" size="31" maxlength="255" value="Enter keywords here"
- type="text"><input value="Google Search" type="submit">
-<input name="sitesearch" value="adegenet.r-forge.r-project.org"
- type="radio"> adegenet website
-<input name="sitesearch"
- value="lists.r-forge.r-project.org/pipermail/adegenet-forum/"
- checked="checked" type="radio"> adegenet-forum archives <br>
-<br>
+<span style="font-weight: bold; color: rgb(0, 102, 0);">Mailing lists
+archives </span><br>
+Use the <a target="_top" href="search.html">search engine</a> to
+browse the <span style="font-weight: bold;">archives</span> of the <span
+ style="font-weight: bold;">adegenet forum</span>.<br>
See the '<a href="contact.html">contact</a>' section of this website
-for further information mailing lists.<br>
+for further information on mailing lists.<br>
<br>
<br>
<span style="font-weight: bold; color: rgb(0, 102, 0);">Miscellaneous<br>
</span>- <a href="files/worksOnlyInDiploids.txt">worksOnyInDiploids.txt</a>:
-the list of <span style="font-weight: bold;">functions</span> working <span
+the
+list of <span style="font-weight: bold;">functions</span> working <span
style="font-weight: bold;">only for diploid</span> genotypes <br>
<br>
<br>
Modified: www/marge.html
===================================================================
--- www/marge.html 2012-08-10 10:37:25 UTC (rev 1027)
+++ www/marge.html 2012-08-10 14:54:29 UTC (rev 1028)
@@ -52,10 +52,11 @@
<span style="text-decoration: underline;"></span></big></div>
<big><span style="text-decoration: underline;"></span></big>
<div style="text-align: center;"><a href="contact.html"
- target="principal"><big><span style="text-decoration: underline;">Contact</span></big></a><big><span
- style="text-decoration: underline;"><a href="contact.html"
- target="principal">/FAQ</a><br>
+ target="principal"><big><span style="text-decoration: underline;">Contact/FAQ</span></big></a><big><span
+ style="text-decoration: underline;"><br>
<br>
+<a target="_top" href="search.html">Search</a><br>
+<br>
</span></big><big><span style="text-decoration: underline;"><a
href="https://r-forge.r-project.org/projects/adegenet/" target="_top"><img
alt="" src="images/RForge.png"
Added: www/search.html
===================================================================
--- www/search.html (rev 0)
+++ www/search.html 2012-08-10 14:54:29 UTC (rev 1028)
@@ -0,0 +1,42 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+<head>
+ <meta content="text/html; charset=ISO-8859-1"
+ http-equiv="content-type">
+ <title>search</title>
+ <script type="text/javascript">
+
+ var _gaq = _gaq || [];
+ _gaq.push(['_setAccount', 'UA-20083187-1']);
+ _gaq.push(['_trackPageview']);
+
+ (function() {
+ var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
+ ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
+ var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
+ })();
+
+ </script>
+</head>
+<body>
+<span style="font-weight: bold; color: rgb(0, 102, 0);">Search engine </span><img
+ style="width: 80px; height: 37px;" alt="new" src="images/new.png"><br>
+<br>
+Use this engine to make a research on adegenet <span
+ style="font-weight: bold;">website</span>
+or <span style="font-weight: bold;">adegenet-forum's archives</span>:<br>
+<br>
+
+<form method="get" action="http://www.google.com/search">
+ <div style="text-align: left;"><input name="q" size="31"
+ maxlength="255" value="Enter keywords here" type="text">
+ <input value="Google Search" type="submit"><input name="sitesearch"
+ value="adegenet.r-forge.r-project.org" type="radio"> adegenet website
+ <input name="sitesearch"
+ value="lists.r-forge.r-project.org/pipermail/adegenet-forum/"
+ checked="checked" type="radio"> adegenet-forum archives <br>
+ </div>
+</form>
+
+</body>
+</html>
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