[adegenet-commits] r998 - www

Wed Apr 11 12:14:52 CEST 2012

Author: jombart
Date: 2012-04-11 12:14:52 +0200 (Wed, 11 Apr 2012)
New Revision: 998

Modified:
   www/news.html
Log:
R change version


Modified: www/news.html
===================================================================

--- www/news.html	2012-04-11 10:11:03 UTC (rev 997)
+++ www/news.html	2012-04-11 10:14:52 UTC (rev 998)
@@ -34,7 +34,7 @@
 <span style="font-weight: bold;"><big>Today</big> </span><span
  style="font-weight: bold;"></span><span style="font-weight: bold;"></span><br>
 <span style="font-weight: bold;"></span>Current stable version of <span
- style="color: rgb(255, 0, 0);">adegenet is 1.3-4 </span>for R.2.14.1.<br>
+ style="color: rgb(255, 0, 0);">adegenet is 1.3-4 </span>for R.2.15.0.<br>
 You can install the devel version from <a
  href="https://r-forge.r-project.org/scm/?group_id=120">R-Forge</a>.<br>
 See the current <a
@@ -47,14 +47,17 @@
  style="width: 80px; height: 37px;" alt="" src="images/new.png"><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.3-4</span>)
 
-has been released for R-2.14.1!</big> The package has undergone some
+has
+been released for R-2.14.1!</big> The package has undergone some
 internal changes in the documentation which should make no difference
 to users, except for a drastic reduction in <span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">download
-and installed size (respectively 4-5MB and 6-7MB). Many examples have
+and
+installed size (respectively 4-5MB and 6-7MB). Many examples have
 been 'inactivated' to comply with CRAN check runtime policy, meaning
 these won't be run by '<span style="font-family: monospace;">example(myFunction)</span>'
-anymore, but will still be available in the documentation. See the </span></span><span
+anymore,
+but will still be available in the documentation. See the </span></span><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);"></span></span><a
  href="http://cran.r-project.org/web/packages/adegenet/ChangeLog">ChangeLog</a><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);"></span></span><span
@@ -66,7 +69,8 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.3-3</span>)
 
-has been released for R-2.14.1!</big> Just in time for Christmas, ain't
+has
+been released for R-2.14.1!</big> Just in time for Christmas, ain't
 that nice? This release includes a brand new version of <span
  style="color: rgb(255, 0, 0); font-family: monospace;">propShared</span>
 which fixes an important bug, and now allows for any ploidy level while
@@ -84,13 +88,15 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.3-2</span>)
 
-has been released for R-2.14.0!</big> This minor release fixes some
+has
+been released for R-2.14.0!</big> This minor release fixes some
 issues in the detection of the number of cores occuring on some
 platforms, as well as a few fixes in manpages. Function <span
  style="font-family: monospace; color: rgb(255, 0, 0);">fstat</span> is
 now gone for good as <span style="font-style: italic;">hierfstat </span>package
 
-seems to be gone for good from CRAN, but the documentation shows how to
+seems
+to be gone for good from CRAN, but the documentation shows how to
 use <span style="color: rgb(255, 0, 0); font-family: monospace;">Fst</span>
 from the <span style="font-style: italic;">pegas </span>package
 instead. <span style="color: rgb(255, 0, 0);"><span
@@ -106,7 +112,8 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.3-1</span>)
 
-has been released for R-2.13.1!</big> Less is more: this new release is
+has
+been released for R-2.13.1!</big> Less is more: this new release is
 much smaller in size than 1.3-0, while containing the same material. It
 also fixes a few minor issues in documentation and in the legend of
 dapc scatterplots. <span style="color: rgb(255, 0, 0);"><span
@@ -122,8 +129,9 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.3-0</span>)
 
-has been released for R-2.13.0!</big><span
- style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+has
+been released for R-2.13.0!</big><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);">
 This new major release implements new classes and methods for the
 handling and analysis of genome-wide SNP data, along with several
 improvements to previous tools (especially new graphics for DAPC) </span></span><span
@@ -159,14 +167,16 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-8</span>)
 
-has been released for R-2.12.0!</big><span
- style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+has
+been released for R-2.12.0!</big><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);">
 This release </span></span><span style="color: rgb(255, 0, 0);"><span
  style="color: rgb(0, 0, 0);">fixes a bug in exports from adegenet to
 hierfstat (function <span
  style="color: rgb(255, 0, 0); font-family: monospace;">genind2hierfstat</span>),
 
-which lead to wrong <span
+which
+lead to wrong <span
  style="font-family: monospace; color: rgb(255, 0, 0);">fstat</span>
 computations in some cases. See the </span></span><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);"></span></span><a
@@ -180,8 +190,9 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-7</span>)
 
-has been released for R-2.12.0!</big><span
- style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+has
+been released for R-2.12.0!</big><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);">
 This release includes the stable implementation of the <span
  style="font-style: italic;">Discriminant Analysis of Principal
 Components</span> (<span style="font-style: italic;">DAPC</span>, <span
@@ -201,8 +212,9 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-6</span>)
 
-has been released for R-2.11.1!</big><span
- style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+has
+been released for R-2.11.1!</big><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);">
 This release adds the computation of pairwise Fst (</span></span><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);"></span></span><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);"><span
@@ -231,8 +243,9 @@
 30/07/2010 </span><span style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-5</span>)
 
-has been released for R-2.11.1!</big><span
- style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+has
+been released for R-2.11.1!</big><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);">
 This release includes a stable implementation of the <span
  style="font-style: italic;">SeqTrack </span>algorithm </span></span><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
@@ -271,8 +284,9 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-4</span>)
 
-has been released for R-2.10.1 !</big><span
- style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+has
+been released for R-2.10.1 !</big><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);">
 This release corrects a few issues and bugs from previous version, and
 includes new material currently under review in scientific journals.
 Once 'stable', these new functionalities will give rise to the major
@@ -300,7 +314,8 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-3</span>)
 
-has been released for R.2.8.1 !</big><br>
+has
+been released for R.2.8.1 !</big><br>
 This is a important<span style="color: rgb(255, 0, 0);"><span
  style="color: rgb(0, 0, 0);"> release, including some significant
 improvements (see </span></span><a href="files/ChangeLog">ChangeLog</a><span
@@ -316,7 +331,8 @@
 aligned DNA sequences using <span
  style="color: rgb(255, 0, 0); font-family: monospace;">DNAbin2genind</span>.This
 
-time, the tutorial has been updated at the same time as the package
+time,
+the tutorial has been updated at the same time as the package
 release!<br>
 <br>
 <br>
@@ -324,37 +340,45 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-2</span>)
 
-has been released for R.2.8.0 !</big><br>
+has
+been released for R.2.8.0 !</big><br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
 
-new, big release implements many new things and corrects a few bugs
+new,
+big release implements many new things and corrects a few bugs
 (see </span></span><a href="files/ChangeLog">ChangeLog</a><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
 file). Amongst the biggest news, <span style="font-weight: bold;">several
 
-levels of ploidy</span> are now handled throughout the package, apart
+levels
+of ploidy</span> are now handled throughout the package, apart
 from a few exceptions. New graphics are available for multivariate
 methods: the <span
  style="font-family: monospace; color: rgb(255, 0, 0);">colorplot</span>,
 
-which can represent genetic diversity using RGB scale, and a <span
+which
+can represent genetic diversity using RGB scale, and a <span
  style="font-family: monospace; color: rgb(255, 0, 0);">loadingplot</span>,
 
-which can be used to assess the most structuring alleles and loci in an
+which
+can be used to assess the most structuring alleles and loci in an
 analysis.  A new georeferenced genetic dataset is also available
 (dataset <span style="color: rgb(255, 0, 0); font-family: monospace;">rupica</span>).
 
-And... <a href="files/ChangeLog">several other things</a>!<br>
+And...
+<a href="files/ChangeLog">several other things</a>!<br>
 </span></span><br>
 <br>
 <span style="font-weight: bold;">03/08/2008 </span><span
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-1</span>)
 
-has been released for R.2.7.1 !</big><br>
+has
+been released for R.2.7.1 !</big><br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
 
-new release corrects a few bugs arising in version 1.2-0 (see </span></span><a
+new
+release corrects a few bugs arising in version 1.2-0 (see </span></span><a
  href="files/ChangeLog">ChangeLog</a><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
 file), especially an issue with the detection of NAs. Documentation was
@@ -366,10 +390,12 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.2-0</span>)
 
-has been released for R.2.7.1 !</big><br>
+has
+been released for R.2.7.1 !</big><br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
 
-major release implements various levels of ploidy and adds some new
+major
+release implements various levels of ploidy and adds some new
 features (see </span></span><a href="files/ChangeLog">ChangeLog</a><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
 file):<br>
@@ -397,10 +423,12 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.1-2</span>)
 
-has been released for R.2.7.0 !</big><br>
+has
+been released for R.2.7.0 !</big><br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
 
-release corrects a few bugs and adds some new features (see </span></span><a
+release
+corrects a few bugs and adds some new features (see </span></span><a
  href="files/ChangeLog">ChangeLog</a><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
 file):<br>
@@ -431,7 +459,8 @@
 The new function '<span
  style="font-family: monospace; color: rgb(255, 0, 0);">propShared</span>'
 
-is available from the devel version of adegenet. It computes the <span
+is
+available from the devel version of adegenet. It computes the <span
  style="color: rgb(255, 0, 0);">proportion of shared alleles</span>
 among a set of genotypes.<br>
 <br>
@@ -440,10 +469,12 @@
  style="font-weight: bold;"></span><br>
 <big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.1-1</span>)
 
-has been released for R.2.6.2 !</big><br>
+has
+been released for R.2.6.2 !</big><br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
 
-release corrects a few bugs and adds some new features:<br>
+release
+corrects a few bugs and adds some new features:<br>
     - <span style="font-family: monospace;"></span></span></span><span
  style="text-decoration: underline;">I/O:</span> <span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);"><span
@@ -465,8 +496,8 @@
 boundary (argument <span
  style="font-family: monospace; color: rgb(255, 0, 0);">bd.length</span>).
 
-The function <span
- style="font-family: monospace; color: rgb(255, 0, 0);">chooseCN</span>
+The
+function <span style="font-family: monospace; color: rgb(255, 0, 0);">chooseCN</span>
 has a new option to return a list of spatial weights defined as the
 inverse of spatial distances, at a given exponent.<br>
     - <span style="text-decoration: underline;">F
@@ -474,7 +505,6 @@
 genind objects, through the new function <span
  style="font-family: monospace; color: rgb(255, 0, 0);">fstat</span>.<br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">   
-
 </span></span>- <span style="text-decoration: underline;">Data
 manipulation:</span> The elements of the <span
  style="color: rgb(255, 0, 0); font-family: monospace;">@other</span>
@@ -492,10 +522,12 @@
  style="font-weight: bold;"></span><big><span style="font-weight: bold;"><br>
 </span><small>New adegenet version (<span style="color: rgb(255, 0, 0);">1.1-0</span>)
 
-has been released for R.2.6.2.</small></big><br>
+has
+been released for R.2.6.2.</small></big><br>
 <span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
 
-totally new version includes:<br>
+totally
+new version includes:<br>
     - <span style="text-decoration: underline;">Data
 representation:</span> </span></span><span
  style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">S4
@@ -525,7 +557,6 @@
  style="font-weight: bold;"></span><span style="font-weight: bold;"><br>
 </span>adegenet is now a project on <a
  href="https://r-forge.r-project.org/projects/adegenet/" target="_top">R-Forge</a>.
-
 <span style="font-weight: bold;"><br>
 </span><br>
 <br>
@@ -544,7 +575,8 @@
 This new version corrects a few bugs (especially in <span
  style="font-family: monospace; color: rgb(255, 0, 0);">optimize.monmonier</span>)
 
-and adds the following elements:<br>
+and
+adds the following elements:<br>
 - <span style="font-family: monospace;"><span
  style="color: rgb(255, 0, 0);">adegenetWeb</span> </span>is a simple
 function opening the adegenet website in the default web browser.<br>
@@ -555,7 +587,8 @@
 - <span style="color: rgb(255, 0, 0); font-family: monospace;">monmonier</span>
 documentation was improved <span style="color: rgb(255, 0, 0);"></span>by
 
-adding a genetic example, using <span
+adding
+a genetic example, using <span
  style="font-family: monospace; color: rgb(255, 0, 0);">sim2pop</span><span
  style="color: rgb(255, 0, 0);"> </span>data.<br>
 <span style="font-weight: bold;"><br>
@@ -582,7 +615,6 @@
  style="color: rgb(255, 0, 0);">monmonier</span>, <span
  style="color: rgb(255, 0, 0);">optimize.</span></span><span
  style="font-family: monospace;"><span style="color: rgb(255, 0, 0);">monmonier</span>,
-
 <span style="color: rgb(255, 0, 0);">plot.</span></span><span
  style="font-family: monospace;"><span style="color: rgb(255, 0, 0);">monmonier</span>
 </span>and<span style="font-family: monospace;"> <span

