[adegenet-commits] r977 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Nov 24 11:10:37 CET 2011
Author: jombart
Date: 2011-11-24 11:10:35 +0100 (Thu, 24 Nov 2011)
New Revision: 977
Modified:
www/literature.html
Log:
ref +1 (Seb!)
Modified: www/literature.html
===================================================================
--- www/literature.html 2011-11-22 10:19:25 UTC (rev 976)
+++ www/literature.html 2011-11-24 10:10:35 UTC (rev 977)
@@ -55,7 +55,8 @@
to
the
-bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
+bublisher's
+website</a><span style="color: rgb(0, 153, 0);">]</span>
<img style="width: 80px; height: 37px;" alt="" src="images/new.png"><br
style="color: rgb(0, 153, 0);">
<br>
@@ -77,18 +78,19 @@
<br>
- the paper presenting the <span style="font-style: italic;">spatial
principal component analysis</span> (<span style="font-style: italic;">sPCA</span>,
-
function
<span style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
global
-and local tests (<span
+and
+local tests (<span
style="font-family: monospace; color: rgb(255, 0, 0);">global.rtest</span>
and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
<b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b> </b>(2008)<b> </b>Revealing
cryptic
-spatial patterns in genetic variability by a new multivariate
+spatial
+patterns in genetic variability by a new multivariate
method. <span style="font-style: italic;">Heredity</span> <span
style="font-weight: bold;">101</span>: 92-103. doi:
10.1038/hdy.2008.34 [<a
@@ -110,7 +112,8 @@
and
simulations
-of genealoies of haplotypes (<span
+of
+genealoies of haplotypes (<span
style="font-family: monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010) Reconstructing
disease outbreaks from genetic data: a graph approach. <span
@@ -124,7 +127,8 @@
Analysis
of
-Principal Components</span> (<span style="font-style: italic;">DAPC</span>,
+Principal
+Components</span> (<span style="font-style: italic;">DAPC</span>,
functions
<span style="font-family: monospace;"><span
style="color: rgb(255, 0, 0);">find.clusters</span> </span>and <span
@@ -216,7 +220,6 @@
Molecular data provide strong evidence of natural hybridization between
native and introduced lineages of <i>Phragmites australis</i> in North
America. <span style="font-style: italic;">Biological Invasions</span>.
-
doi:
10.1007/s10530-010-9699-6.<br>
<br>
@@ -306,7 +309,6 @@
style="font-style: italic;">Animal Genetics </span><span
style="font-weight: bold;">41</span>: 47-63.<br>
</span><span class="authors"><span style="white-space: nowrap;">[20]
-
Denis
Laloë</span>, <span style="white-space: nowrap;">Katayoun
Moazami-Goudarzi</span>, <span style="white-space: nowrap;">Johannes
@@ -338,7 +340,8 @@
class="citation_date">2010</span> <span class="citation_article_title">Insights
into
-the Genetic History of French Cattle from Dense SNP Data on 47
+the
+Genetic History of French Cattle from Dense SNP Data on 47
Worldwide Breeds. </span> <span style="font-style: italic;"
class="citation_journal_title">PLoS ONE</span><span
class="citation_issue"> <span style="font-weight: bold;">5(9)</span>:</span>
@@ -365,7 +368,8 @@
speciation in the pine processionary moth (<em>Thaumetopoea pityocampa</em>,
Lepidoptera,
-Notodontidae). <span style="font-style: italic;">Journal
+Notodontidae).
+<span style="font-style: italic;">Journal
of Evolutionary Biology</span>, no.
doi: 10.1111/j.1420-9101.2010.02147.x<br>
</p>
@@ -380,7 +384,8 @@
class="citation_date">2010</span> <span class="citation_article_title">Population
Genetic
-Differences along a Latitudinal Cline between Original and
+Differences
+along a Latitudinal Cline between Original and
Recently Colonized Habitat in a Butterfly. </span> <span
style="font-style: italic;" class="citation_journal_title">PLoS ONE</span><span
class="citation_issue"> 5(11):</span> <span
@@ -391,7 +396,8 @@
strains of the red flour beetle. <span style="font-style: italic;">Journal
of
-Applied Entomology</span>, no.
+Applied
+Entomology</span>, no.
doi: 10.1111/j.1439-0418.2010.01593.x<br>
</p>
<p class="authors">[28] Jessica A. Satkoski Trask, Ripan S. Malhi, Sree
@@ -435,7 +441,8 @@
class="citation_date">2011</span> <span class="citation_article_title">Phylogeography
and
-Taxonomy of <i>Trypanosoma brucei</i>. </span> <span
+Taxonomy
+of <i>Trypanosoma brucei</i>. </span> <span
class="citation_journal_title">PLoS Negl Trop Dis</span><span
class="citation_issue"> 5(2):</span> <span class="citation_start_page">e961.</span>
<span class="citation_doi">doi:10.1371/journal.pntd.0000961<br>
@@ -480,7 +487,8 @@
diversity of <span style="font-style: italic;">Toxoplasma gondii</span>:
Example
-of the anthropized environment from French Guiana. <br>
+of
+the anthropized environment from French Guiana. <br>
Infection, Genetics and Evolution.<br>
</p>
<p class="intro">[39] MONTANO, V., FERRI, G., MARCARI, V., BATINI, C.,
@@ -511,7 +519,8 @@
reproduction in natural populations of the Australian carp gudgeon (<em>Hypseleotris</em>:
Eleotridae).
-Molecular Ecology.
+Molecular
+Ecology.
doi: 10.1111/j.1365-294X.2011.05206.x<br>
</p>
<p class="intro">[44] Kinziger, A. P., Nakamoto, R. J., Anderson, E. C.
@@ -564,7 +573,8 @@
spiny lobster (<span style="font-style: italic;">Palinurus elephas</span>).
Biological
-Journal of the Linnean Society. doi:
+Journal
+of the Linnean Society. doi:
10.1111/j.1095-8312.2011.01728.x<br>
</p>
[52]* Farjadian S, Sazzini M, Tofanelli S, Castrì L, Taglioli L,
@@ -612,7 +622,13 @@
microsatellites for assessing the genetic structure of chicken
populations. Animal Genetics. doi: 10.1111/j.1365-2052.2011.02284.x<br>
<br>
+[61] DEVILLARD, S., SANTIN-JANIN, H., SAY, L. and PONTIER, D. (2011),
+Linking genetic diversity and temporal fluctuations in population
+abundance of the introduced feral cat (Felis silvestris catus) on the
+Kerguelen archipelago. Molecular Ecology. doi:
+10.1111/j.1365-294X.2011.05329.x<br>
<br>
+<br>
<p class="intro">* adegenet not or wrongly cited, but actually used in
the paper. <br>
</p>
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