[adegenet-commits] r599 - in pkg: R man

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2010-04-15 20:42:44 +0200 (Thu, 15 Apr 2010)
New Revision: 599

Modified:
   pkg/R/haploPop.R
   pkg/man/adegenet.package.Rd
   pkg/man/monmonier.Rd
   pkg/man/seqTrack.Rd
Log:
No there yet.


Modified: pkg/R/haploPop.R
===================================================================
--- pkg/R/haploPop.R	2010-04-15 18:01:47 UTC (rev 598)
+++ pkg/R/haploPop.R	2010-04-15 18:42:44 UTC (rev 599)
@@ -310,7 +310,6 @@
 ## print.haploPop
 ##################
 print.haploPop <- function(x, ...){
-    x <- object
     myCall <- x$call
 
     cat("\n== haploPop object ==\n")

Modified: pkg/man/adegenet.package.Rd
===================================================================
--- pkg/man/adegenet.package.Rd	2010-04-15 18:01:47 UTC (rev 598)
+++ pkg/man/adegenet.package.Rd	2010-04-15 18:42:44 UTC (rev 599)
@@ -80,7 +80,7 @@
    - \code{\link{HWE.test.genind}}: performs HWE test for all
    populations and loci combinations \cr
    - \code{\link{gstat.randtest}}: performs a Monte Carlo test of Goudet's G statistic, measuring
-   population structure (based on \code{\link[hierfstat]{g.stat.glob}} package \code{hierfstat}).\cr
+   population structure (based on \code{\link[hierfstat]{g.stats.glob}} package \code{hierfstat}).\cr
    - \code{\link{dist.genpop}}: computes 5 genetic distances among populations. \cr
    - \code{\link{monmonier}}: implementation of the Monmonier algorithm,
    used to seek genetic boundaries among individuals or populations. Optimized boundaries can be obtained using

Modified: pkg/man/monmonier.Rd
===================================================================
--- pkg/man/monmonier.Rd	2010-04-15 18:01:47 UTC (rev 598)
+++ pkg/man/monmonier.Rd	2010-04-15 18:42:44 UTC (rev 599)
@@ -120,7 +120,7 @@
 
 \author{Thibaut Jombart \email{t.jombart at imperial.ac.uk}}
 
-\seealso{\code{\link{spca}},\code{\link[spdep]{nb}}}
+\seealso{\code{\link{spca}},\code{\link[spdep]{edit.nb}}}
 
 \examples{
 if(require(spdep) & require(ade4)){

Modified: pkg/man/seqTrack.Rd
===================================================================
--- pkg/man/seqTrack.Rd	2010-04-15 18:01:47 UTC (rev 598)
+++ pkg/man/seqTrack.Rd	2010-04-15 18:42:44 UTC (rev 599)
@@ -9,6 +9,7 @@
 \alias{get.likelihood}
 \alias{get.likelihood.seqTrack}
 \alias{get.likelihood.seqTrack.default}
+\alias{seqTrack-class}
 % \alias{get.result.by}
 % \alias{get.consensus}
 \alias{as,seqTrack,graphNEL-method}