[adegenet-commits] r308 - pkg

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2009-05-14 14:35:22 +0200 (Thu, 14 May 2009)
New Revision: 308

Modified:
   pkg/TODO
Log:
Up TODO


Modified: pkg/TODO
===================================================================
--- pkg/TODO	2009-05-13 13:46:47 UTC (rev 307)
+++ pkg/TODO	2009-05-14 12:35:22 UTC (rev 308)
@@ -40,41 +40,11 @@
 # NEW IMPLEMENTATIONS:
 =====================
 
-o implement handling of presence/absence data -- done (TJ)
-o add a type argument to genind/genpop objects -- done (TJ)
-o make all the required subsequent changes in the package: -- all done, some checks cannot harm (TJ)
-- class definition and checks
-- constructors
-- basic methods
-- spca
-- distances
-- propShared
-- input/output
-- HWE
-- Fstat
-- old2new
-- scaleGen
-- genind2genpop
-- gstat.randtest
-- propTyped
-- hybridize
-- repool
-o select genotypes by population sample size -- done <selPopSize> (TJ)
-o import SNPs from sequence data -- done <DNAbin2genind> (TJ)
+* all genind2df to export alleles on separate columns
 
 
 # TESTING:
 ==========
-o test reading from url files. 
-o MANDATORY: run some decent testing of AFLP data management: -- done
-- df2genind
-- genind
-- genind2genpop
-- summary
-- na.replace
-- scaleGen
-- propTyped
-- ...
 
 
 # LOW PRIORITY / MINOR ISSUES
@@ -102,6 +72,7 @@
 # LONG TERM
 ==========================
 ==========================
+* import from pegas
 * import from geneticsBase -- wait for geneSet to be stable
 * export to geneticsBase -- same thing
 * see where code needs tuning, and use C/C++