[adegenet-commits] r180 - pkg/man www

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2008-09-15 23:41:23 +0200 (Mon, 15 Sep 2008)
New Revision: 180

Modified:
   pkg/man/spcaIllus.Rd
   www/acceuil.html
Log:
Updated frontpage of website.


Modified: pkg/man/spcaIllus.Rd
===================================================================
--- pkg/man/spcaIllus.Rd	2008-09-15 14:04:41 UTC (rev 179)
+++ pkg/man/spcaIllus.Rd	2008-09-15 21:41:23 UTC (rev 180)
@@ -44,6 +44,7 @@
 
 data(spcaIllus)
 attach(spcaIllus)
+opar <- par(no.readonly=TRUE)
 ## comparison PCA vs sPCA
 
 # PCA
@@ -104,6 +105,7 @@
 plotaux(dat4,spca4,lab=dat4$other$sup.pop,sub="dat4 - sPCA loc1",pos="bottomleft",csub=2,axis=2)
 
 # color plot
+par(opar)
 colorplot(spca3, cex=4, main="colorplot sPCA dat3")
 text(spca3$xy[,1], spca3$xy[,2], dat3$pop)
 

Modified: www/acceuil.html
===================================================================
--- www/acceuil.html	2008-09-15 14:04:41 UTC (rev 179)
+++ www/acceuil.html	2008-09-15 21:41:23 UTC (rev 180)
@@ -49,15 +49,21 @@
     </tr>
   </tbody>
 </table>
-<span style="text-decoration: underline;">Main features of adegenet are:</span><br>
+<span style="text-decoration: underline;"><br>
+Main features of adegenet are:</span><br>
+<br>
 </div>
-<br>
 - definition of new object <span style="font-weight: bold;">classes</span>
 to facilitate multivariate analysis<br>
 - data <span style="font-weight: bold;">import</span> from GENETIX,
 STRUCTURE, Genepop, Fstat, Easypop, or any dataframe of genotypes<br>
 - data <span style="font-weight: bold;">export</span> to the R
 packages genetics, hierfstat, LDheatmap<br>
+- handling of <span style="font-weight: bold;">different levels of
+ploidy</span><br>
+- basic and advanced <span style="font-weight: bold;">data manipulation</span><br>
+- basic <span style="font-weight: bold;">data information </span>(heterozygosity,
+numbers of alleles, sample sizes, ...)<br>
 - <span style="font-weight: bold;">HWE</span> and <span
  style="font-weight: bold;">G-statistic</span> <span
  style="font-weight: bold;">tests</span>, F statistics implemented for
@@ -65,11 +71,13 @@
 objects<br>
 - computation of <span style="font-weight: bold;">genetic</span> <span
  style="font-weight: bold;">distances<br>
-</span>- basic data information and advanced functions for <span
- style="font-weight: bold;">data handling<br>
-</span>- methods for <span style="font-weight: bold;">spatial
-genetics: Monmonier algorithm, spatial PCA, tests for global and local
-structuring<br>
+</span>- simulation of <span style="font-weight: bold;">hybridization<br>
+</span><span style="font-weight: bold;"></span>- methods for <span
+ style="font-weight: bold;">spatial
+genetics: sPCA, </span><span style="font-weight: bold;">tests for
+global and local
+structuring, </span><span style="font-weight: bold;">Monmonier
+algorithm<span style="font-weight: bold;"></span><br>
 <br>
 <br>
 </span>Author: adegenet is developed by <a
@@ -77,8 +85,10 @@
 Jombart</a>
 (email: jombart AT biomserv DOT univ-lyon1 DOT fr)<br>
 Contributors: P&eacute;ter
-S&oacute;lymos<span style="font-weight: bold;"><br>
-<br>
+S&oacute;lymos<br>
+Datasets from: Katayoun Moazami-Goudarzi &amp; Denis Lalo&euml;,
+Dominique Pontier <br>
+<span style="font-weight: bold;"><br>
 </span>Suggestions, remarks and contributions are greatly encouraged!<br>
 <br>
 <br>