[adegenet-commits] r193 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Tue Oct 14 12:40:53 CEST 2008
Author: jombart
Date: 2008-10-14 12:40:53 +0200 (Tue, 14 Oct 2008)
New Revision: 193
Added:
www/literature.html
Modified:
www/documentation.html
www/marge.html
Log:
added a section literature in the www.
Modified: www/documentation.html
===================================================================
--- www/documentation.html 2008-10-13 13:07:40 UTC (rev 192)
+++ www/documentation.html 2008-10-14 10:40:53 UTC (rev 193)
@@ -45,31 +45,7 @@
href="files/tutorial-spca.pdf">pdf</a>), showing how to use the
spatial Principal Component Analysis (Jombart et al. 2008)<img
style="width: 80px; height: 37px;" alt="" src="images/new.png"><br>
-<br>
-<span style="text-decoration: underline;">Related publications:</span><br>
-- a paper presenting the sPCA, global and local tests:<br>
- <b>Jombart T, </b>Devillard
-S, Dufour AB, Pontier D<b> </b>(2008)<b> </b>Revealing
-cryptic spatial patterns in genetic variability by a new multivariate
-method. <span style="font-style: italic;">Heredity</span> <span
- style="font-weight: bold;">101</span>: 92-103. doi:
-10.1038/hdy.2008.34 [<a
- href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
-on the journal's website - <a target="_new"
- href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
-abstract</a> - <a href="mailto:jombart at biomserv.univ-lyon1.fr">email me</a>
-for a pdf]<br>
-- an application note presenting the adegenet package:<br>
- <span style="font-weight: bold;">Jombart T.</span> (<span
- style="font-style: italic;"></span>2008)<span
- style="font-weight: bold;"> </span>adegenet: a R
-package for the multivariate analysis of genetic markers. <span
- style="font-style: italic;">Bioinformatics</span> <span
- style="font-weight: bold;">24</span>: 1403-1405. doi:
-10.1093/bioinformatics/btn129
-[<a
- href="http://bioinformatics.oxfordjournals.org/cgi/reprint/btn129?ijkey=6sqx5BTXCdYtBZz&keytype=ref">link</a>
-to a free pdf]<br>
+<span style="text-decoration: underline;"></span><br>
<span style="color: rgb(255, 0, 0);"></span></div>
</body>
</html>
Added: www/literature.html
===================================================================
--- www/literature.html (rev 0)
+++ www/literature.html 2008-10-14 10:40:53 UTC (rev 193)
@@ -0,0 +1,66 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html>
+<head>
+ <meta content="text/html; charset=ISO-8859-1"
+ http-equiv="content-type">
+ <title>documentation</title>
+</head>
+<body>
+<br>
+<br>
+<br>
+<div style="margin-left: 40px;"><span
+ style="text-decoration: underline;">To cite adegenet:</span><br>
+<br>
+<span style="font-weight: bold;">Jombart T.</span> (<span
+ style="font-style: italic;"></span>2008)<span
+ style="font-weight: bold;"> </span>adegenet: a R
+package for the multivariate analysis of genetic markers. <span
+ style="font-style: italic;">Bioinformatics</span> <span
+ style="font-weight: bold;">24</span>: 1403-1405. doi:
+10.1093/bioinformatics/btn129
+[<a
+ href="http://bioinformatics.oxfordjournals.org/cgi/reprint/btn129?ijkey=6sqx5BTXCdYtBZz&keytype=ref">link</a>
+to a free pdf]Here is a list of publications in which
+adegenet was used. <br>
+<br>
+<br>
+<span style="text-decoration: underline;">Related publications:</span><br
+ style="text-decoration: underline;">
+<br>
+- paper presenting the <span style="font-style: italic;">spatial
+principal component analysis</span> (<span
+ style="font-family: monospace; color: rgb(255, 0, 0);">spca</span>),
+global and local tests (<span
+ style="font-family: monospace; color: rgb(255, 0, 0);">globa.rtest</span>
+and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>)<br>
+<b>Jombart T, </b>Devillard
+S, Dufour AB, Pontier D<b> </b>(2008)<b> </b>Revealing
+cryptic spatial patterns in genetic variability by a new multivariate
+method. <span style="font-style: italic;">Heredity</span> <span
+ style="font-weight: bold;">101</span>: 92-103. doi:
+10.1038/hdy.2008.34 [<a
+ href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
+on the journal's website - <a target="_new"
+ href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
+abstract</a> - <a href="mailto:jombart at biomserv.univ-lyon1.fr">email me</a>
+for a pdf]<br>
+</div>
+<br>
+<div style="margin-left: 40px;"><span
+ style="font-family: monospace; font-weight: bold;"></span><span
+ style="font-family: monospace; font-weight: bold;"></span><br>
+<span style="text-decoration: underline;">Publications in which
+adegenet was used:</span><br style="text-decoration: underline;">
+<br>
+Satkoski, JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi VS, Smith
+DG (2008) Pyrosequencing as a method for SNP identification in the
+rhesus macaque (<em>Macaca mulatta</em>). <br>
+<div><span class="citation-abbreviation"><span
+ style="font-style: italic;">BMC Genomics</span></span><span
+ class="citation-publication-date"> </span><span
+ style="font-weight: bold;" class="citation-volume">9</span><span
+ class="citation-issue"></span><span class="citation-flpages">: 256. </span></div>
+<span style="color: rgb(255, 0, 0);"></span></div>
+</body>
+</html>
Modified: www/marge.html
===================================================================
--- www/marge.html 2008-10-13 13:07:40 UTC (rev 192)
+++ www/marge.html 2008-10-14 10:40:53 UTC (rev 193)
@@ -7,7 +7,8 @@
</head>
<body>
<div style="text-align: center;">
-<a href="http://lbbe.univ-lyon1.fr/?lang=en" target="_top"><img alt="" src="images/logo.png" style="border: 0px solid ;"></a><br>
+<a href="http://lbbe.univ-lyon1.fr/?lang=en" target="_top"><img alt=""
+ src="images/logo.png" style="border: 0px solid ;"></a><br>
<br>
<big><br>
<a href="acceuil.html" target="principal">Main</a><br>
@@ -27,6 +28,8 @@
<div style="text-align: center;"><big><a href="documentation.html"
target="principal">Documents</a><br>
<br>
+</big><big><a href="literature.html" target="principal">Literature</a></big><br>
+<big><br>
</big>
<div style="text-align: center;"><big><a href="screenshots.html"
target="principal">Screenshots</a><br>
@@ -37,10 +40,12 @@
<big><span style="text-decoration: underline;"></span></big>
<div style="text-align: center;"><big><span
style="text-decoration: underline;"><a href="contact.html"
- target="principal">Contact</a><br>
+ target="principal">Contact</a></span></big><big><span
+ style="text-decoration: underline;"><br>
<br>
-<a href="https://r-forge.r-project.org/projects/adegenet/" target="_top"><img alt=""
- src="images/RForge.png"
+</span></big><big><span style="text-decoration: underline;"><a
+ href="https://r-forge.r-project.org/projects/adegenet/" target="_top"><img
+ alt="" src="images/RForge.png"
style="border: 0px solid ; width: 99px; height: 24px;"></a><br>
</span></big></div>
</div>
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