[adegenet-commits] r186 - in pkg: man misc/bug-report.1.2-2.01

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2008-10-09 14:18:35 +0200 (Thu, 09 Oct 2008)
New Revision: 186

Modified:
   pkg/man/read.structure.Rd
   pkg/misc/bug-report.1.2-2.01/.RData
   pkg/misc/bug-report.1.2-2.01/.Rhistory
Log:
Fixed the doc of read.strcture.


Modified: pkg/man/read.structure.Rd
===================================================================
--- pkg/man/read.structure.Rd	2008-10-09 11:35:52 UTC (rev 185)
+++ pkg/man/read.structure.Rd	2008-10-09 12:18:35 UTC (rev 186)
@@ -12,7 +12,7 @@
    single or on two rows before importing data.
  }
 \usage{
-read.structure(file, n.ind=NULL, n.loc=NULL,  onerowperind=FALSE, col.lab=NULL, col.pop=NULL, col.others=NULL, row.marknames=NULL, NA.char="-9", pop=NULL, missing=NA, ask=TRUE, quiet=FALSE)
+read.structure(file, n.ind=NULL, n.loc=NULL,  onerowperind=NULL, col.lab=NULL, col.pop=NULL, col.others=NULL, row.marknames=NULL, NA.char="-9", pop=NULL, missing=NA, ask=TRUE, quiet=FALSE)
 }
 \arguments{
   \item{file}{ a character string giving the path to the file to

Modified: pkg/misc/bug-report.1.2-2.01/.RData
===================================================================
(Binary files differ)

Modified: pkg/misc/bug-report.1.2-2.01/.Rhistory
===================================================================
--- pkg/misc/bug-report.1.2-2.01/.Rhistory	2008-10-09 11:35:52 UTC (rev 185)
+++ pkg/misc/bug-report.1.2-2.01/.Rhistory	2008-10-09 12:18:35 UTC (rev 186)
@@ -42,3 +42,79 @@
 head(genind2df(x))
 q()
 y
+read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1)
+read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1,col.other=NULL)
+read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1,col.other=NULL,ask=FALSE)
+x <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1,col.other=NULL,ask=FALSE)
+x
+uenames
+genind2df(x)
+genind2df(x,truenames=TRUE)
+x$loc.names
+nloc(x)
+nLoc(x)
+debug(read.structure)
+x <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1,col.other=NULL,ask=FALSE)
+row.marknames
+ask
+is.null(row.marknames)
+Q
+x <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1,col.other=NULL,ask=FALSE,row.mark=1)
+Q
+undebug(read.structure)
+x <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,col.pop=2,onerow=TRUE,col.lab=1,col.other=NULL,ask=FALSE,row.mark=1)
+x
+genind2df(x)
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3)
+15
+1
+2
+1
+debug(read.structure)
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3)
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3)
+3
+15
+undebug(read.structure)
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,onerow=TRUE,col.lab=1,col.po=2,ask=FALSE)
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,onerow=TRUE,col.lab=1,col.po=2)
+1
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,onerow=TRUE,col.lab=1)
+2
+1
+y$loc.names
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15,onerow=TRUE)
+1
+2
+1
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15)
+1
+2
+1
+as.logical(as.integer(0))
+as.logical(as.integer(1))
+as.logical(as.integer(123123))
+as.logical(as.integer(0.2))
+source("/home/master/dev/adegenet/pkg/R/import.R")
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15)
+1
+2
+1
+y
+y
+genind2df(y)
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15)
+source("/home/master/dev/adegenet/pkg/R/import.R")
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15)
+1
+2
+1
+y
+y
+y <- read.structure("/home/master/dev/adegenet/pkg/misc/bug-report.1.2-2.01/secondData.stru",n.ind=3,n.loc=15)
+1
+2
+1
+n
+q()
+y