[adegenet-commits] r148 - in www: . files
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sun Jun 29 18:50:27 CEST 2008
Author: jombart
Date: 2008-06-29 18:50:27 +0200 (Sun, 29 Jun 2008)
New Revision: 148
Added:
www/files/haplo.txt
www/files/triplo.txt
Modified:
www/documentation.html
www/files/tutorial.pdf
www/news.html
Log:
New tuto, news in the www, toy data files added.
Modified: www/documentation.html
===================================================================
--- www/documentation.html 2008-06-29 16:49:30 UTC (rev 147)
+++ www/documentation.html 2008-06-29 16:50:27 UTC (rev 148)
@@ -28,12 +28,20 @@
documentation of the package.<br>
- the adegenet <span style="font-weight: bold;">tutorial</span> (<a
href="files/tutorial.pdf">pdf</a>), which goes through the main
-functionalities of the package.<br>
-- files required for some parts of the tutorial<br>
+functionalities of the package.<img style="width: 80px; height: 37px;"
+ alt="" src="images/new.png"><br>
+- <span style="font-weight: bold;">files</span> <span
+ style="font-weight: bold;">required</span> for some parts of the
+tutorial<br>
> <a href="files/AFLP.txt">AFLP.txt</a>:
a toy dataset reproducing AFLP data <br>
+ > <a href="files/haplo.txt">haplo.txt</a>:
+a toy dataset reproducing haploid data <br>
+ > <a href="files/triplo.txt">triplo.txt</a>:
+a toy dataset reproducing triploid data <br>
- <a href="files/worksOnlyInDiploids.txt">worksOnyInDiploids.txt</a>:
-the list of functions working only for diploid genotypes <img
+the list of <span style="font-weight: bold;">functions</span> working <span
+ style="font-weight: bold;">only for diploid</span> genotypes <img
style="width: 80px; height: 37px;" alt="" src="images/new.png"><br>
<br>
<span style="text-decoration: underline;">Related publications:</span><br>
Added: www/files/haplo.txt
===================================================================
--- www/files/haplo.txt (rev 0)
+++ www/files/haplo.txt 2008-06-29 16:50:27 UTC (rev 148)
@@ -0,0 +1,8 @@
+ locTruc locYo LocMiss loc11
+gen1 3 04 NA 11
+gen2 03 4 NA 10
+toto NA 05 NA 10
+youpi 45 01 NA NA
+foo 02 04 NA 11
+mrNA NA NA NA NA
+last 04 04 NA 09
Added: www/files/triplo.txt
===================================================================
--- www/files/triplo.txt (rev 0)
+++ www/files/triplo.txt 2008-06-29 16:50:27 UTC (rev 148)
@@ -0,0 +1,8 @@
+ locTruc locYo LocMiss loc11
+gen1 3/04/03 04/05/05 NA 11/11/11
+gen2 03/3/03 4/4/5 NA/NA/NA 10/10/10
+toto NA/NA/NA 05/6/06 NA 10/11/11
+youpi 45/40/42 01/02/03 NA NA/11/NA
+foo 02/02/03 04/04/4 NA 11/12/11
+mrNA NA/NA/NA NA/NA/NA NA/NA/NA NA/NA/NA
+last 04/04/04 04/01/02 NA 09/08/07
Modified: www/files/tutorial.pdf
===================================================================
(Binary files differ)
Modified: www/news.html
===================================================================
--- www/news.html 2008-06-29 16:49:30 UTC (rev 147)
+++ www/news.html 2008-06-29 16:50:27 UTC (rev 148)
@@ -6,14 +6,27 @@
<title>news</title>
</head>
<body>
-<span style="font-weight: bold;"><br>
+<span style="font-weight: bold;"></span><span style="font-weight: bold;"></span><br>
<br>
-</span>
<div style="margin-left: 40px;"><big><big><span
style="font-weight: bold;"></span></big></big><span
style="font-weight: bold;"></span><span style="font-weight: bold;"></span><span
style="color: rgb(255, 0, 0);"></span><br>
+<span style="font-weight: bold;"></span><span style="font-weight: bold;"><big>Incoming</big></span><span
+ style="font-weight: bold;"> <img alt="" src="images/new.png"
+ style="width: 80px; height: 37px;"></span><span
+ style="font-weight: bold;"></span><span style="font-weight: bold;"></span><br>
+<span style="font-weight: bold;"></span>The next version of adegenet is
+<span style="color: rgb(255, 0, 0);">adegenet is
+1.2-0 </span>for R.2.7.0. It is mostly achieved, and awaits testing by
+courageous users by before being released on CRAN. Big news is: the
+package now handles <span style="font-weight: bold;">different levels
+of ploidy</span>, which explains the change from 1.1-2 to 1.2. A few
+new features will be added with this version, like the computation of
+proportions of available (i.e., typed) data by individual/population,
+markers, or both.<br>
<br>
+<br>
<span style="font-weight: bold;"><big>Today</big> </span><span
style="font-weight: bold;"></span><span style="font-weight: bold;"></span><br>
<span style="font-weight: bold;"></span>Current
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