[adegenet-commits] r120 - / pkg/man www www/files
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Jun 2 15:18:11 CEST 2008
Author: jombart
Date: 2008-06-02 15:18:11 +0200 (Mon, 02 Jun 2008)
New Revision: 120
Modified:
adegenet_1.1-2.tar.gz
pkg/man/spcaIllus.Rd
www/download.html
www/files/adegenet_1.1-2.tar.gz
www/news.html
Log:
New release adegenet 1.1-2
Modified: adegenet_1.1-2.tar.gz
===================================================================
(Binary files differ)
Modified: pkg/man/spcaIllus.Rd
===================================================================
--- pkg/man/spcaIllus.Rd 2008-05-30 15:10:17 UTC (rev 119)
+++ pkg/man/spcaIllus.Rd 2008-06-02 13:18:11 UTC (rev 120)
@@ -83,8 +83,6 @@
}
# plots
-get(getOption("device"))(width=10,height=5)
-par(mfrow=c(1,2))
plotaux(dat2A,pca2A,sub="dat2A - PCA",pos="bottomleft",csub=2)
plotaux(dat2A,spca2A,sub="dat2A - sPCA glob1",pos="bottomleft",csub=2)
@@ -94,7 +92,6 @@
plotaux(dat2C,pca2C,sub="dat2C - PCA",pos="bottomleft",csub=2)
plotaux(dat2C,spca2C,sub="dat2C - sPCA loc1",pos="bottomleft",csub=2,axis=2)
-get(getOption("device"))()
par(mfrow=c(2,2))
plotaux(dat3,pca3,sub="dat3 - PCA axis1",pos="bottomleft",csub=2)
plotaux(dat3,spca3,sub="dat3 - sPCA glob1",pos="bottomleft",csub=2)
Modified: www/download.html
===================================================================
--- www/download.html 2008-05-30 15:10:17 UTC (rev 119)
+++ www/download.html 2008-06-02 13:18:11 UTC (rev 120)
@@ -18,11 +18,11 @@
<img alt="" src="images/bullet.png" style="width: 10px; height: 10px;">
The
<span style="font-weight: bold;">current stable version</span>
-(adegenet_1.1-1)
+(adegenet_1.1-2)
is available as:<br>
-- <a href="files/adegenet_1.1-1.tar.gz">linux/unix sources</a><br>
+- <a href="files/adegenet_1.1-2.tar.gz">linux/unix sources</a><br>
- MacOS X binary (to come)<br>
-- <a href="files/adegenet_1.1-1.zip">Windows binary</a><br>
+- Windows binary (to come)<br>
<br>
<img alt="" src="images/bullet.png" style="width: 10px; height: 10px;">
The
@@ -47,6 +47,11 @@
<img alt="" src="images/bullet.png" style="width: 10px; height: 10px;">
<span style="font-weight: bold;">Older
versions</span>: <br>
+adegenet_1.1-1<br>
+- <a href="files/adegenet_1.1-1.tar.gz">linux/unix sources</a><br>
+- <a href="files/adegenet_1.1-1.tgz">MacOS X binary</a><br>
+- <a href="files/adegenet_1.1-1.zip">Windows binary</a><br>
+<br>
adegenet_1.1-0<br>
- <a href="files/adegenet_1.1-0.tar.gz">linux/unix sources</a><br>
- <a href="files/adegenet_1.1-0.tgz">MacOS X binary</a><br>
Modified: www/files/adegenet_1.1-2.tar.gz
===================================================================
(Binary files differ)
Modified: www/news.html
===================================================================
--- www/news.html 2008-05-30 15:10:17 UTC (rev 119)
+++ www/news.html 2008-06-02 13:18:11 UTC (rev 120)
@@ -18,16 +18,47 @@
style="font-weight: bold;"></span><span style="font-weight: bold;"></span><br>
<span style="font-weight: bold;"></span>Current
version of <span style="color: rgb(255, 0, 0);">adegenet is
-1.1-1 </span>for R.2.7.0.<br>
+1.1-2 </span>for R.2.7.0.<br>
You can install the devel version from <a
href="https://r-forge.r-project.org/scm/?group_id=120">R-Forge</a>.<br>
See the current <a href="files/ChangeLog">ChangeLog</a> and <a
href="https://r-forge.r-project.org/plugins/scmsvn/viewcvs.php/*checkout*/pkg/TODO?rev=64&root=adegenet">TODO
list</a> of the package.<br>
<br>
-<span style="font-weight: bold;">30/04/2008 </span><span
+<span style="font-weight: bold;">02/06/2008 </span><span
style="font-weight: bold;"><img alt="" src="images/new.png"
style="width: 80px; height: 37px;"></span><br>
+<big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.1-2</span>)
+has been released for R.2.7.0 !</big><br>
+<span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
+release corrects a few bugs and adds some new features (see </span></span><a
+ href="files/ChangeLog">ChangeLog</a><span
+ style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">
+file):<br>
+ - </span><span style="font-family: monospace;">genind2df</span></span>
+now handles the pop argument correctly.<br>
+ - <span
+ style="color: rgb(255, 0, 0); font-family: monospace;">df2genind</span>
+does no longer bug when there is an entirely non-typed locus.<br>
+ - new function <span
+ style="color: rgb(255, 0, 0); font-family: monospace;">propShared</span>
+is added: computes the proportion of shared alleles among a set of
+genotypes (core computations in C).<br>
+ - significant improvement in the speed of <span
+ style="color: rgb(255, 0, 0); font-family: monospace;">genind2df</span>
+(more than twice as fast as before).<br>
+ - improvement of the <span
+ style="color: rgb(255, 0, 0);">validity checking</span> for
+genind/genpop: <span
+ style="color: rgb(255, 0, 0); font-family: monospace;">validObject</span>
+now detects duplicates in any kind of names (ind.names, pop.names,
+etc.) and prints the corresponding items.<span
+ style="font-family: monospace;"><br>
+</span><span style="color: rgb(255, 0, 0);"><span
+ style="color: rgb(0, 0, 0);"></span></span><span
+ style="font-weight: bold;"><br>
+30/04/2008 </span><span style="font-weight: bold;"><img alt=""
+ src="images/new.png" style="width: 80px; height: 37px;"></span><br>
The new function '<span
style="font-family: monospace; color: rgb(255, 0, 0);">propShared</span>'
is available from the devel version of adegenet. It computes the <span
@@ -35,8 +66,7 @@
among a set of genotypes.<br>
<br>
<span style="font-weight: bold;">09/04/2008 </span><span
- style="font-weight: bold;"><img alt="" src="images/new.png"
- style="width: 80px; height: 37px;"></span><br>
+ style="font-weight: bold;"></span><br>
<big>New adegenet version (<span style="color: rgb(255, 0, 0);">1.1-1</span>)
has been released for R.2.6.2 !</big><br>
<span style="color: rgb(255, 0, 0);"><span style="color: rgb(0, 0, 0);">This
@@ -115,9 +145,7 @@
chosenGenotypes, chosenAlleles]'.<br>
<br>
<span style="font-weight: bold;">07/01/2008 </span><span
- style="font-weight: bold;"><img alt="" src="images/new.png"
- style="width: 80px; height: 37px;"></span><span
- style="font-weight: bold;"><br>
+ style="font-weight: bold;"></span><span style="font-weight: bold;"><br>
</span>adegenet is now a project on <a
href="https://r-forge.r-project.org/projects/adegenet/" target="_top">R-Forge</a>.
<span style="font-weight: bold;"><br>
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