[adegenet-commits] r99 - pkg pkg/R pkg/man www

Fri Apr 18 19:42:32 CEST 2008

Author: jombart
Date: 2008-04-18 19:42:32 +0200 (Fri, 18 Apr 2008)
New Revision: 99

Modified:
   pkg/DESCRIPTION
   pkg/R/zzz.R
   pkg/TITLE
   pkg/man/adegenet.package.Rd
   www/acceuil.html
   www/contact.html
Log:
Last changes before the release.


Modified: pkg/DESCRIPTION
===================================================================

--- pkg/DESCRIPTION	2008-04-15 15:16:15 UTC (rev 98)
+++ pkg/DESCRIPTION	2008-04-18 17:42:32 UTC (rev 99)
@@ -1,7 +1,7 @@
 Package: adegenet
-Version: 1.1-0
-Date: 2008/02/12
-Title: The adegenet package for R: classes and methods for the multivariate analysis of genetic markers.
+Version: 1.1-1
+Date: 2008/04/18
+Title: adegenet: a R package for the multivariate analysis of genetic markers.
 Author: Thibaut Jombart <jombart at biomserv.univ-lyon1.fr>, with contributions from Peter Solymos
 Maintainer: Thibaut Jombart <jombart at biomserv.univ-lyon1.fr>
 Suggests: ade4, genetics, hierfstat, spdep, tripack

Modified: pkg/R/zzz.R
===================================================================
--- pkg/R/zzz.R	2008-04-15 15:16:15 UTC (rev 98)
+++ pkg/R/zzz.R	2008-04-18 17:42:32 UTC (rev 99)
@@ -7,5 +7,6 @@
   cat("   ##########################\n\n")
   
   cat(" - to start, type '?adegenet'\n")
-  cat(" - to browse adegenet website, type 'adegenetWeb()'\n\n")
+  cat(" - to browse adegenet website, type 'adegenetWeb()'\n")
+  cat(" - to post questions/comments: adegenet-forum at lists.r-forge.r-project.org\n\n")
 }

Modified: pkg/TITLE
===================================================================
--- pkg/TITLE	2008-04-15 15:16:15 UTC (rev 98)
+++ pkg/TITLE	2008-04-18 17:42:32 UTC (rev 99)
@@ -1 +1 @@
-The adegenet package for R: classes and methods for the multivariate analysis of genetic markers.
\ No newline at end of file
+adegenet: a R package for the multivariate analysis of genetic markers.
\ No newline at end of file

Modified: pkg/man/adegenet.package.Rd
===================================================================
--- pkg/man/adegenet.package.Rd	2008-04-15 15:16:15 UTC (rev 98)
+++ pkg/man/adegenet.package.Rd	2008-04-18 17:42:32 UTC (rev 99)
@@ -82,9 +82,9 @@
    - \code{\link{hybridize}}: implements hybridization between two populations. \cr
    - \code{\link{spca}}: implements Jombart et al. (in revision) spatial
    Principal Component Analysis \cr
-   - \code{\link{global.rtest}}: implements Jombart et al. (in revision)
+   - \code{\link{global.rtest}}: implements Jombart et al. (2008)
    test for global spatial structures \cr
-   - \code{\link{local.rtest}}: implements Jombart et al. (in revision)
+   - \code{\link{local.rtest}}: implements Jombart et al. (2008)
    test for local spatial structures \cr
 
    Adegenet also proposes several real or simulated datasets.\cr
@@ -92,23 +92,28 @@
    For more information, visit the adegenet website by typing
    \code{adegenetWeb()}.\cr
 
-   To cite adegenet, please use the reference given by \code{citation("adegenet")}.
+   To cite adegenet, please use the reference given by
+   \code{citation("adegenet")} (or see reference below).
  }
 \details{
   \tabular{ll}{
     Package: \tab adegenet\cr
     Type: \tab Package\cr
-    Version: \tab 1.1-0\cr
-    Date: \tab 2008-02-12\cr
+    Version: \tab 1.1-1\cr
+    Date: \tab 2008-04-18\cr
     License: \tab GPL (>=2)
   }  
 }
-\author{Thibaut Jombart <jombart at biomserv.univ-lyon1.fr>}
+\author{Thibaut Jombart <jombart at biomserv.univ-lyon1.fr>\cr
+with contributions of Peter Solymos}
 \references{
 Jombart T. (2008) adegenet: a R package for the multivariate analysis of genetic markers
 \emph{Bioinformatics}. doi: 10.1093/bioinformatics/btn129\cr
   
-  See adegenet website: \url{http://adegenet.r-forge.r-project.org/}
+See adegenet website: \url{http://adegenet.r-forge.r-project.org/}\cr
+
+Please post your questions on 'the adegenet forum': adegenet-forum at lists.r-forge.r-project.org
+
 }
 \keyword{manip}
 \keyword{multivariate}

Modified: www/acceuil.html
===================================================================
--- www/acceuil.html	2008-04-15 15:16:15 UTC (rev 98)
+++ www/acceuil.html	2008-04-18 17:42:32 UTC (rev 99)
@@ -30,7 +30,7 @@
 package for the multivariate analysis of genetic markers. <span
  style="font-style: italic;">Bioinformatics</span>. doi:
 10.1093/bioinformatics/btn129
-[<a href="http://bioinformatics.oxfordjournals.org/cgi/reprint/btn129">link</a>
+[<a href="http://bioinformatics.oxfordjournals.org/cgi/reprint/btn129?ijkey=6sqx5BTXCdYtBZz&keytype=ref">link</a>
 to a free pdf]<br>
 <br>
 <div style="text-align: left;">

Modified: www/contact.html
===================================================================
--- www/contact.html	2008-04-15 15:16:15 UTC (rev 98)
+++ www/contact.html	2008-04-18 17:42:32 UTC (rev 99)
@@ -13,13 +13,15 @@
 something about adegenet, depending on what you are looking for:<br>
 <br>
 <img alt="" src="images/bullet.png" style="width: 10px; height: 10px;">
-Most questions will go there: questions/resquests about the package,
+<span style="font-weight: bold;">Most questions will go there</span>:
+questions/resquests about the package,
 bug
 reports, <span style="font-style: italic;"></span>or more general
 questions about the analysis of genetic markers in R:<br>
-- the <a href="mailto:adegenet-forum at lists.r-forge.r-project.org">adegenet
-mailing list</a> (adegenet-forum AT lists DOT r-forge DOT r-project
-DOTorg)<br>
+- the <a style="font-weight: bold;"
+ href="mailto:adegenet-forum at lists.r-forge.r-project.org">adegenet forum</a>
+(adegenet-forum AT lists DOT r-forge DOT r-project
+DOT org)<br>
 - to subscribe to this ML, go <a
  href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum"
  target="_top">there</a><br>

