[adegenet-commits] r86 - pkg pkg/inst www

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2008-04-04 17:09:07 +0200 (Fri, 04 Apr 2008)
New Revision: 86

Modified:
   pkg/TODO
   pkg/inst/CITATION
   www/acceuil.html
   www/documentation.html
Log:
Added reference to the application note in Bioinformatics.


Modified: pkg/TODO
===================================================================
--- pkg/TODO	2008-04-03 11:54:42 UTC (rev 85)
+++ pkg/TODO	2008-04-04 15:09:07 UTC (rev 86)
@@ -64,7 +64,7 @@
 * import from geneticsBase -- for now their basic class is not even documented!
 * export to geneticsBase -- same thing
 * see where code needs tuning, and use C/C++
-* implement globa.rtest and local.rtest for genind/genpop objects
+* implement global.rtest and local.rtest for genind/genpop objects
 * Implement method "scale" for genind / genpop objects
 * Implement dudi wrappers for genind / genpop objects
 *
\ No newline at end of file

Modified: pkg/inst/CITATION
===================================================================
--- pkg/inst/CITATION	2008-04-03 11:54:42 UTC (rev 85)
+++ pkg/inst/CITATION	2008-04-04 15:09:07 UTC (rev 86)
@@ -1,11 +1,10 @@
 citHeader("To cite the adegenet package:")
 
 citEntry(
-entry="misc",
-title = "The adegenet package for R: classes and methods for the multivariate analysis of genetic markers.",
-year = "2008",
+entry="Article",
+title = "adegenet: a R package for the multivariate analysis of genetic markers",
+journal= "Bioinformatics",
+year = "in press",
 author = "T. Jombart",
-school = "University Lyon 1, Biometry and Evolutive Biology Laboratory, UMR-CNRS 5558",
-textVersion = "Jombart, T. (2008) The adegenet package for R: classes and methods for the multivariate analysis of genetic markers.
-url: http://adegenet.r-forge.r-project.org/"
+textVersion = "Jombart, T. (in press) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics"
 )

Modified: www/acceuil.html
===================================================================
--- www/acceuil.html	2008-04-03 11:54:42 UTC (rev 85)
+++ www/acceuil.html	2008-04-04 15:09:07 UTC (rev 86)
@@ -22,7 +22,11 @@
 a R
 package for multivariate analysis, graphics, phylogeny and spatial
 analysis. It is currently hosted by <a
- href="https://r-forge.r-project.org/projects/adegenet/" target="_top">R-Forge</a>.<br>
+ href="https://r-forge.r-project.org/projects/adegenet/" target="_top">R-Forge</a>.
+adegenet is described in the following application note:<br>
+Jombart, T. (<span style="font-style: italic;">in press</span>)
+adegenet: a R package for the multivariate analysis of genetic markers.
+<span style="font-style: italic;">Bioinformatics</span><br>
 <br>
 <div style="text-align: left;">
 <table style="width: 95%; text-align: left;" border="0" cellpadding="2"
@@ -62,7 +66,8 @@
 <br>
 <br>
 </span>Author: adegenet is developed by <a
- href="http://biomserv.univ-lyon1.fr/%7Ejombart/" target="_top">Thibaut Jombart</a>
+ href="http://biomserv.univ-lyon1.fr/%7Ejombart/" target="_top">Thibaut
+Jombart</a>
 (email: jombart AT biomserv DOT univ-lyon1 DOT fr)<br>
 Contributors: P&eacute;ter
 S&oacute;lymos<span style="font-weight: bold;"><br>

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2008-04-03 11:54:42 UTC (rev 85)
+++ www/documentation.html	2008-04-04 15:09:07 UTC (rev 86)
@@ -38,8 +38,9 @@
 method. <span style="font-style: italic;">Heredity</span>.]<br>
 - an application note presenting the adegenet package [<span
  style="font-weight: bold;">Jombart T</span>.<span
- style="font-weight: bold;"> </span>adegenet: a R
-package for the multivariate analysis of genetic markers. Submitted to <span
+ style="font-weight: bold;"> </span>(<span style="font-style: italic;">in
+press</span>)<span style="font-weight: bold;"> </span>adegenet: a R
+package for the multivariate analysis of genetic markers. <span
  style="font-style: italic;">Bioinformatics</span>.]<br>
 <span style="color: rgb(255, 0, 0);"></span></div>
 </body>