[Vegan-commits] r2482 - branches/2.0 branches/2.0/inst www

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2013-03-19 10:34:36 +0100 (Tue, 19 Mar 2013)
New Revision: 2482

Modified:
   branches/2.0/DESCRIPTION
   branches/2.0/inst/NEWS.Rd
   www/NEWS.html
Log:
edits for release 2.0-7

Modified: branches/2.0/DESCRIPTION
===================================================================
--- branches/2.0/DESCRIPTION	2013-03-17 10:07:32 UTC (rev 2481)
+++ branches/2.0/DESCRIPTION	2013-03-19 09:34:36 UTC (rev 2482)
@@ -1,7 +1,7 @@
 Package: vegan
 Title: Community Ecology Package
 Version: 2.0-7
-Date: March 8, 2013
+Date: March 19, 2013
 Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, 
    Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, 
    M. Henry H. Stevens, Helene Wagner  

Modified: branches/2.0/inst/NEWS.Rd
===================================================================
--- branches/2.0/inst/NEWS.Rd	2013-03-17 10:07:32 UTC (rev 2481)
+++ branches/2.0/inst/NEWS.Rd	2013-03-19 09:34:36 UTC (rev 2482)
@@ -8,14 +8,14 @@
     \itemize{
 
       \item \code{tabasco()} is a new function for graphical display
-      of community data matrix.  Technically it is only an interface
-      to \R \code{heatmap}, but its user interface and intended use is
-      closer to \pkg{vegan} \code{vegemite}. The function can reorder
-      the community data matrix similarly as \code{vegemite}, for
-      instance, by ordination results. Unlike \code{heatmap}, it only
-      displays dendrograms if supplied by the user, and it defaults to
-      re-order the dendrograms by correspondence analysis.  Species
-      are usually ordered to match site ordering.
+      of community data matrix.  Technically it is an interface to \R
+      \code{heatmap}, but its use is closer to \pkg{vegan} function
+      \code{vegemite}. The function can reorder the community data
+      matrix similarly as \code{vegemite}, for instance, by ordination
+      results. Unlike \code{heatmap}, it only displays dendrograms if
+      supplied by the user, and it defaults to re-order the
+      dendrograms by correspondence analysis.  Species are ordered to
+      match site ordering or like determined by the user.
 
     }
   } % new functions
@@ -39,7 +39,7 @@
       \item The \code{plot} function for constrained ordination
       results (\code{cca}, \code{rda}, \code{capscale}) gained
       argument \code{axis.bp} (defaults \code{TRUE}) which can be used
-      to suppress plotting axis scale for biplot arrays.
+      to suppress axis scale for biplot arrays.
 
       \item Number of iterations in nonmetric multidimensional scaling
       (NMDS) can be set with keyword \code{maxit} (defaults
@@ -54,11 +54,11 @@
 
       \item The result objects of \code{cca}, \code{rda} and
       \code{capscale} will no longer have scores \code{u.eig},
-      \code{v.eig} and \code{wa.eig} in future versions of
-      \pkg{vegan}. All \pkg{vegan} functions use only normalized
-      scores and scale these for users as needed, and this change will
-      not influence normal users.  However, external scripts and
-      packages may need changes in the future versions of \pkg{vegan}.
+      \code{v.eig} and \code{wa.eig} in the future versions of
+      \pkg{vegan}. This change does not influence normal usage,
+      because \pkg{vegan} functions do not need these items.  However,
+      external scripts and packages may need changes in the future
+      versions of \pkg{vegan}.
 
     }   
   } % deprecated

Modified: www/NEWS.html
===================================================================
--- www/NEWS.html	2013-03-17 10:07:32 UTC (rev 2481)
+++ www/NEWS.html	2013-03-19 09:34:36 UTC (rev 2482)
@@ -19,14 +19,14 @@
 
 <ul>
 <li> <p><code>tabasco()</code> is a new function for graphical display
-of community data matrix.  Technically it is only an interface
-to <font face="Courier New,Courier" color="#666666"><b>R</b></font> <code>heatmap</code>, but its user interface and intended use is
-closer to <span class="pkg">vegan</span> <code>vegemite</code>. The function can reorder
-the community data matrix similarly as <code>vegemite</code>, for
-instance, by ordination results. Unlike <code>heatmap</code>, it only
-displays dendrograms if supplied by the user, and it defaults to
-re-order the dendrograms by correspondence analysis.  Species
-are usually ordered to match site ordering.
+of community data matrix.  Technically it is an interface to <font face="Courier New,Courier" color="#666666"><b>R</b></font>
+<code>heatmap</code>, but its use is closer to <span class="pkg">vegan</span> function
+<code>vegemite</code>. The function can reorder the community data
+matrix similarly as <code>vegemite</code>, for instance, by ordination
+results. Unlike <code>heatmap</code>, it only displays dendrograms if
+supplied by the user, and it defaults to re-order the
+dendrograms by correspondence analysis.  Species are ordered to
+match site ordering or like determined by the user.
 </p>
 </li></ul>
 
@@ -59,7 +59,7 @@
 <li><p> The <code>plot</code> function for constrained ordination
 results (<code>cca</code>, <code>rda</code>, <code>capscale</code>) gained
 argument <code>axis.bp</code> (defaults <code>TRUE</code>) which can be used
-to suppress plotting axis scale for biplot arrays.
+to suppress axis scale for biplot arrays.
 </p>
 </li>
 <li><p> Number of iterations in nonmetric multidimensional scaling
@@ -78,11 +78,11 @@
 <ul>
 <li><p> The result objects of <code>cca</code>, <code>rda</code> and
 <code>capscale</code> will no longer have scores <code>u.eig</code>,
-<code>v.eig</code> and <code>wa.eig</code> in future versions of
-<span class="pkg">vegan</span>. All <span class="pkg">vegan</span> functions use only normalized
-scores and scale these for users as needed, and this change will
-not influence normal users.  However, external scripts and
-packages may need changes in the future versions of <span class="pkg">vegan</span>.
+<code>v.eig</code> and <code>wa.eig</code> in the future versions of
+<span class="pkg">vegan</span>. This change does not influence normal usage,
+because <span class="pkg">vegan</span> functions do not need these items.  However,
+external scripts and packages may need changes in the future
+versions of <span class="pkg">vegan</span>.
 </p>
 </li></ul>