[Vegan-commits] r2109 - branches/2.0/inst www

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2012-02-26 16:26:34 +0100 (Sun, 26 Feb 2012)
New Revision: 2109

Modified:
   branches/2.0/inst/NEWS.Rd
   www/NEWS.html
Log:
update NEWS for vegan 2.0-3

Modified: branches/2.0/inst/NEWS.Rd
===================================================================
--- branches/2.0/inst/NEWS.Rd	2012-02-26 15:07:29 UTC (rev 2108)
+++ branches/2.0/inst/NEWS.Rd	2012-02-26 15:26:34 UTC (rev 2109)
@@ -43,6 +43,10 @@
       \code{plot} function for constrained ordination, and
       \code{anova(<cca.object>, by = "margin")}.
 
+      \item The \code{scores} function for \code{monoMDS} did not
+      honour \code{choices} argument and hence dimensions could not be
+      chosen in \code{plot}.
+
       \item The default \code{scores} method failed if the number of
       requested axes was higher than the ordination object had.  This
       was reported as an error in \code{ordiplot} in
@@ -69,6 +73,13 @@
        is the same as the component \code{[a] = X1|X2} in variance
        partition in \code{varpart} and describes the marginal (unique)
        effect of constraining term to adjusted \eqn{R^2}{R-squared}.
+
+       \item Added Cao dissimilarity (CYd) as a new dissimilarity
+       method in \code{vegdist} following Cao et al., \emph{Water
+       Envir Res} 69, 95--106 (1997). The index should be good for
+       data with high beta diversity and variable sampling
+       intensity. Thanks to consultation to Yong Cao (Univ Illinois,
+       USA).
      
      }
   } % end new features

Modified: www/NEWS.html
===================================================================
--- www/NEWS.html	2012-02-26 15:07:29 UTC (rev 2108)
+++ www/NEWS.html	2012-02-26 15:26:34 UTC (rev 2109)
@@ -62,6 +62,11 @@
 <code>anova(<cca.object>, by = "margin")</code>.
 </p>
 </li>
+<li><p> The <code>scores</code> function for <code>monoMDS</code> did not
+honour <code>choices</code> argument and hence dimensions could not be
+chosen in <code>plot</code>.
+</p>
+</li>
 <li><p> The default <code>scores</code> method failed if the number of
 requested axes was higher than the ordination object had.  This
 was reported as an error in <code>ordiplot</code> in
@@ -95,6 +100,14 @@
 partition in <code>varpart</code> and describes the marginal (unique)
 effect of constraining term to adjusted <i>R-squared</i>.
 </p>
+</li>
+<li><p> Added Cao dissimilarity (CYd) as a new dissimilarity
+method in <code>vegdist</code> following Cao et al., <EM>Water
+Envir Res</EM> 69, 95–106 (1997). The index should be good for
+data with high beta diversity and variable sampling
+intensity. Thanks to consultation to Yong Cao (Univ Illinois,
+USA).
+</p>
 </ul>