[Vegan-commits] r2254 - pkg/vegan/man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2012-08-20 15:14:12 +0200 (Mon, 20 Aug 2012)
New Revision: 2254

Modified:
   pkg/vegan/man/clamtest.Rd
   pkg/vegan/man/mantel.correlog.Rd
Log:
stylistic changes in manual pages

Modified: pkg/vegan/man/clamtest.Rd
===================================================================
--- pkg/vegan/man/clamtest.Rd	2012-08-20 06:16:34 UTC (rev 2253)
+++ pkg/vegan/man/clamtest.Rd	2012-08-20 13:14:12 UTC (rev 2254)
@@ -142,9 +142,9 @@
 \examples{
 data(mite)
 data(mite.env)
-x <- clamtest(mite, mite.env$Shrub=="None", alpha=0.005)
-summary(x)
-head(x)
-plot(x)
+sol <- clamtest(mite, mite.env$Shrub=="None", alpha=0.005)
+summary(sol)
+head(sol)
+plot(sol)
 }
 \keyword{ htest }

Modified: pkg/vegan/man/mantel.correlog.Rd
===================================================================
--- pkg/vegan/man/mantel.correlog.Rd	2012-08-20 06:16:34 UTC (rev 2253)
+++ pkg/vegan/man/mantel.correlog.Rd	2012-08-20 13:14:12 UTC (rev 2254)
@@ -146,10 +146,10 @@
 mite.hel.resid <- resid(lm(as.matrix(mite.hel) ~ ., data=mite.xy))
 
 # Compute the detrended species distance matrix
-mite.hel.D = dist(mite.hel.resid)
+mite.hel.D <- dist(mite.hel.resid)
 
 # Compute Mantel correlogram with cutoff, Pearson statistic
-mite.correlog = mantel.correlog(mite.hel.D, XY=mite.xy, nperm=49)
+mite.correlog <- mantel.correlog(mite.hel.D, XY=mite.xy, nperm=49)
 summary(mite.correlog)
 mite.correlog   
 # or: print(mite.correlog)
@@ -157,8 +157,8 @@
 plot(mite.correlog)
 
 # Compute Mantel correlogram without cutoff, Spearman statistic
-mite.correlog2 = mantel.correlog(mite.hel.D, XY=mite.xy, cutoff=FALSE, 
-r.type="spearman", nperm=49)
+mite.correlog2 <- mantel.correlog(mite.hel.D, XY=mite.xy, cutoff=FALSE, 
+   r.type="spearman", nperm=49)
 summary(mite.correlog2)
 mite.correlog2
 plot(mite.correlog2)