[Vegan-commits] r1799 - in branches: . 2.0 2.0/inst 2.0/inst/doc
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Sep 7 14:06:12 CEST 2011
Author: jarioksa
Date: 2011-09-07 14:06:12 +0200 (Wed, 07 Sep 2011)
New Revision: 1799
Added:
branches/2.0/
branches/2.0/inst/doc/vegan.bib
Removed:
branches/2.0/inst/doc/vegan.bib
branches/2.0/tests/
Modified:
branches/2.0/DESCRIPTION
branches/2.0/inst/ChangeLog
Log:
copy pkg/vegan to branches/2.0 for the release & remove tests/
Modified: branches/2.0/DESCRIPTION
===================================================================
--- pkg/vegan/DESCRIPTION 2011-09-07 08:55:33 UTC (rev 1797)
+++ branches/2.0/DESCRIPTION 2011-09-07 12:06:12 UTC (rev 1799)
@@ -12,4 +12,4 @@
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
License: GPL-2
-URL: http://vegan.r-forge.r-project.org/
+URL: http://cran.r-project.org, http://vegan.r-forge.r-project.org/
Modified: branches/2.0/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog 2011-09-07 08:55:33 UTC (rev 1797)
+++ branches/2.0/inst/ChangeLog 2011-09-07 12:06:12 UTC (rev 1799)
@@ -1,12 +1,14 @@
$Date$
-VEGAN DEVEL VERSIONS at http://r-forge.r-project.org/
+VEGAN RELEASE VERSIONS at http://cran.r-project.org/
Version 2.0-0 (released September 7, 2011)
- * opened the release candidate ov vegan_2.0-0 on September 3,
- 2011.
-
+ * opened the release candidate of vegan_2.0-0 on September 3,
+ 2011 in the devel branch pkg/vegan at r1785.
+ * Release: Copied the devel pkg/vegan branch to release
+ branches/2.0 at r1796 (inst/doc/vegan.bib at r1798), and removed
+ tests/ directory.
* some old functions used attributes(x)$which instead of more
correct attr(x, "which"), and in addition postMDS() used
attributes(x)$names instead of names(). Concerns anosim(),
@@ -15,10 +17,11 @@
since the first vegan release on 6/9/01, and it was changed day
before it turned ten-years-old. After this, wisconsin() is the
only unchanged function from the first release.
-
* vegan-defunct: put definitions of removed "new" permutation
functions to vegan-defunct and have a vegan-defunct.Rd for them.
+VEGAN DEVEL VERSIONS at http://vegan.r-forge.r-project.org/
+
Version 1.92-2 (closed September 3, 2011)
* monoMDS: saves and displays info on the dissimilarities used,
Deleted: branches/2.0/inst/doc/vegan.bib
===================================================================
--- pkg/vegan/inst/doc/vegan.bib 2011-09-07 08:55:33 UTC (rev 1797)
+++ branches/2.0/inst/doc/vegan.bib 2011-09-07 12:06:12 UTC (rev 1799)
@@ -1,99 +0,0 @@
- at Book{Sedgewick90,
- author = {R. Sedgewidk},
- title = {Algorithms in {C}},
- publisher = {Addison Wesley},
- year = 1990}
-
- at Article{MiklosPod04,
- author = {I. Mikl{\'o}s and J. Podani},
- title = {Randomization of presence--absence matrices:
- comments and new algorithms},
- journal = {Ecology},
- year = 2004,
- volume = 85,
- pages = {86-92}}
-
- at Article{GotelliEnt01,
- author = {N. J. Gotelli and G. L. Entsminger},
- title = {Swap and fill algorithms in null model analysis:
- rethinking the knight's tour},
- journal = {Oecologia},
- year = 2001,
- volume = 129,
- pages = {281-291}}
-
- at Article{AtmarPat93,
- author = {W. Atmar and B. D. Patterson},
- title = {The measure of order and disorder in the
- distribution of species in fragmented habitat},
- journal = {Oecologia},
- year = 1993,
- volume = 96,
- pages = {373-382}
-}
-
- at Article{RodGir06,
- author = {M. A. Rodr{\'i}guez-Giron{\'e}s and L. Santamaria},
- title = {A new algorithm to calculate the nestedness
- temperature of presence--absence matrices},
- journal = {Journal of Biogeography},
- year = 2006,
- volume = 33,
- pages = {921-935}}
-
- at article{Palmer93,
- author = {M. W. Palmer},
- title = {Putting things in even better order: The advantages
- of canonical correspondence analysis},
- journal = {Ecology},
- volume = {74},
- pages = {2215-2230},
- year = {1993}
-}
- at article{McCune97,
- author = {B. McCune},
- title = {Influence of noisy environmental data on canonical
- correspondence analysis},
- journal = {Ecology},
- volume = {78},
- pages = {2617-2623},
- year = {1997}
-}
- at article{Braak86,
- author = {C. J. F. ter Braak},
- title = {Canonical correspondence analysis: a new eigenvector
- technique for multivariate direct gradient analysis},
- journal = {Ecology},
- volume = {67},
- pages = {1167-1179},
- year = {1986}
-}
- at Book{Legendre-Legendre98,
- author = {P. Legendre and L. Legendre},
- title = {Numerical ecology},
- publisher = {Elsevier},
- year = 1998,
- number = 20,
- series = {Developments in Environmental Modelling},
- address = {Amsterdam},
- edition = {2nd}
-}
- at book{Jongman87,
- author = {R. H. Jongman and C. J. F. ter Braak and
- O. F. R. van Tongeren},
- title = {Data analysis in community and landscape ecology},
- pages = {299},
- publisher = {Pudoc},
- address = {Wageningen},
- year = {1987}
-}
- at Manual{CANOCO4,
- title = {CANOCO reference manual and user's guide to Canoco
- for Windows: Software for canonical community
- ordination (version 4)},
- author = {C. J. F ter Braak and P. {\v S}milauer},
- organization = {Microcomputer Power},
- address = {Ithaca, NY},
- year = 1998
-}
-
Copied: branches/2.0/inst/doc/vegan.bib (from rev 1798, pkg/vegan/inst/doc/vegan.bib)
===================================================================
--- branches/2.0/inst/doc/vegan.bib (rev 0)
+++ branches/2.0/inst/doc/vegan.bib 2011-09-07 12:06:12 UTC (rev 1799)
@@ -0,0 +1,99 @@
+ at Book{Sedgewick90,
+ author = {R. Sedgewick},
+ title = {Algorithms in {C}},
+ publisher = {Addison Wesley},
+ year = 1990}
+
+ at Article{MiklosPod04,
+ author = {I. Mikl{\'o}s and J. Podani},
+ title = {Randomization of presence--absence matrices:
+ comments and new algorithms},
+ journal = {Ecology},
+ year = 2004,
+ volume = 85,
+ pages = {86-92}}
+
+ at Article{GotelliEnt01,
+ author = {N. J. Gotelli and G. L. Entsminger},
+ title = {Swap and fill algorithms in null model analysis:
+ rethinking the knight's tour},
+ journal = {Oecologia},
+ year = 2001,
+ volume = 129,
+ pages = {281-291}}
+
+ at Article{AtmarPat93,
+ author = {W. Atmar and B. D. Patterson},
+ title = {The measure of order and disorder in the
+ distribution of species in fragmented habitat},
+ journal = {Oecologia},
+ year = 1993,
+ volume = 96,
+ pages = {373-382}
+}
+
+ at Article{RodGir06,
+ author = {M. A. Rodr{\'i}guez-Giron{\'e}s and L. Santamaria},
+ title = {A new algorithm to calculate the nestedness
+ temperature of presence--absence matrices},
+ journal = {Journal of Biogeography},
+ year = 2006,
+ volume = 33,
+ pages = {921-935}}
+
+ at article{Palmer93,
+ author = {M. W. Palmer},
+ title = {Putting things in even better order: The advantages
+ of canonical correspondence analysis},
+ journal = {Ecology},
+ volume = {74},
+ pages = {2215-2230},
+ year = {1993}
+}
+ at article{McCune97,
+ author = {B. McCune},
+ title = {Influence of noisy environmental data on canonical
+ correspondence analysis},
+ journal = {Ecology},
+ volume = {78},
+ pages = {2617-2623},
+ year = {1997}
+}
+ at article{Braak86,
+ author = {C. J. F. ter Braak},
+ title = {Canonical correspondence analysis: a new eigenvector
+ technique for multivariate direct gradient analysis},
+ journal = {Ecology},
+ volume = {67},
+ pages = {1167-1179},
+ year = {1986}
+}
+ at Book{Legendre-Legendre98,
+ author = {P. Legendre and L. Legendre},
+ title = {Numerical ecology},
+ publisher = {Elsevier},
+ year = 1998,
+ number = 20,
+ series = {Developments in Environmental Modelling},
+ address = {Amsterdam},
+ edition = {2nd}
+}
+ at book{Jongman87,
+ author = {R. H. Jongman and C. J. F. ter Braak and
+ O. F. R. van Tongeren},
+ title = {Data analysis in community and landscape ecology},
+ pages = {299},
+ publisher = {Pudoc},
+ address = {Wageningen},
+ year = {1987}
+}
+ at Manual{CANOCO4,
+ title = {CANOCO reference manual and user's guide to Canoco
+ for Windows: Software for canonical community
+ ordination (version 4)},
+ author = {C. J. F ter Braak and P. {\v S}milauer},
+ organization = {Microcomputer Power},
+ address = {Ithaca, NY},
+ year = 1998
+}
+
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