[Vegan-commits] r1748 - in pkg/vegan: man tests/Examples

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2011-08-24 07:34:42 +0200 (Wed, 24 Aug 2011)
New Revision: 1748

Modified:
   pkg/vegan/man/specaccum.Rd
   pkg/vegan/tests/Examples/vegan-Ex.Rout.save
Log:
fix \alias, udate tests

Modified: pkg/vegan/man/specaccum.Rd
===================================================================
--- pkg/vegan/man/specaccum.Rd	2011-08-24 05:06:26 UTC (rev 1747)
+++ pkg/vegan/man/specaccum.Rd	2011-08-24 05:34:42 UTC (rev 1748)
@@ -6,6 +6,9 @@
 \alias{boxplot.specaccum}
 \alias{fitspecaccum}
 \alias{plot.fitspecaccum}
+\alias{fitted.specaccum}
+\alias{predict.specaccum}
+\alias{predict.fitspecaccum}
 
 \title{Species Accumulation Curves }
 \description{

Modified: pkg/vegan/tests/Examples/vegan-Ex.Rout.save
===================================================================
--- pkg/vegan/tests/Examples/vegan-Ex.Rout.save	2011-08-24 05:06:26 UTC (rev 1747)
+++ pkg/vegan/tests/Examples/vegan-Ex.Rout.save	2011-08-24 05:34:42 UTC (rev 1748)
@@ -23,7 +23,7 @@
 > options(warn = 1)
 > library('vegan')
 Loading required package: permute
-This is vegan 1.92-0
+This is vegan 1.92-1
 > 
 > assign(".oldSearch", search(), pos = 'CheckExEnv')
 > cleanEx()
@@ -4699,7 +4699,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x103c3dff8>
+<environment: 0x10287b4d8>
 
 Estimated degrees of freedom:
 6.4351  total = 7.435071 
@@ -4715,7 +4715,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x1048ab260>
+<environment: 0x1063282d0>
 
 Estimated degrees of freedom:
 6.0761  total = 7.076141 
@@ -4871,7 +4871,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x105d6ef90>
+<environment: 0x106f94150>
 
 Estimated degrees of freedom:
 8.9275  total = 9.927492 
@@ -4884,7 +4884,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x106065b50>
+<environment: 0x10248f178>
 
 Estimated degrees of freedom:
 7.7529  total = 8.75294 
@@ -4897,7 +4897,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x106947a38>
+<environment: 0x107583468>
 
 Estimated degrees of freedom:
 8.8962  total = 9.89616 
@@ -6024,7 +6024,8 @@
 > ### Name: specaccum
 > ### Title: Species Accumulation Curves
 > ### Aliases: specaccum print.specaccum summary.specaccum plot.specaccum
-> ###   boxplot.specaccum fitspecaccum plot.fitspecaccum
+> ###   boxplot.specaccum fitspecaccum plot.fitspecaccum fitted.specaccum
+> ###   predict.specaccum predict.fitspecaccum
 > ### Keywords: univar models
 > 
 > ### ** Examples
@@ -6167,14 +6168,13 @@
       Asym       xmid      slope 
 258.440682   2.442061   1.858694 
 > fitted(mod1)
- [1]  94.34749 121.23271 137.45031 148.83053 157.45735 164.31866 169.95946
- [8] 174.71115 178.78954 182.34254 185.47566 188.26658 190.77402 193.04337
-[15] 195.11033 197.00350 198.74606 200.35705 201.85227 203.24499 204.54643
-[22] 205.76612 206.91229 207.99203 209.01150 209.97609 210.89054 211.75903
-[29] 212.58527 213.37256 214.12386 214.84180 215.52877 216.18692 216.81820
-[36] 217.42437 218.00703 218.56767 219.10762 219.62811 220.13027 220.61514
-[43] 221.08369 221.53679 221.97528 222.39991 222.81138 223.21037 223.59747
-[50] 223.97327
+ [1]  90.7800 121.6098 139.0459 150.7116 159.2363 165.8306 171.1421 175.5532
+ [9] 179.3056 182.5604 185.4292 187.9914 190.3056 192.4155 194.3545 196.1488
+[17] 197.8188 199.3810 200.8487 202.2329 203.5425 204.7851 205.9671 207.0937
+[25] 208.1696 209.1987 210.1844 211.1296 212.0371 212.9090 213.7474 214.5541
+[33] 215.3308 216.0789 216.7998 217.4947 218.1647 218.8109 219.4342 220.0355
+[41] 220.6157 221.1755 221.7156 222.2368 222.7397 223.2249 223.6930 224.1445
+[49] 224.5800 225.0000
 > plot(sp1)
 > ## Add Lomolino model using argument 'add'
 > plot(mod1, add = TRUE, col=2, lwd=2)
@@ -7121,7 +7121,7 @@
 
 Formula:
 y ~ s(x1, x2, k = knots)
-<environment: 0x107a06cd8>
+<environment: 0x1088e0720>
 
 Estimated degrees of freedom:
 2  total = 3 
@@ -7586,7 +7586,7 @@
 > ### * <FOOTER>
 > ###
 > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  181.374 2.354 219.591 0 0 
+Time elapsed:  102.422 1.06 104.995 0 0 
 > grDevices::dev.off()
 null device 
           1