[Vegan-commits] r1595 - in pkg/vegan: . inst man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2011-04-27 19:59:14 +0200 (Wed, 27 Apr 2011)
New Revision: 1595

Added:
   pkg/vegan/man/nobs.adonis.Rd
Modified:
   pkg/vegan/DESCRIPTION
   pkg/vegan/inst/ChangeLog
   pkg/vegan/man/vegan-internal.Rd
Log:
document nobs methods for vegan

Modified: pkg/vegan/DESCRIPTION
===================================================================
--- pkg/vegan/DESCRIPTION	2011-04-27 11:52:00 UTC (rev 1594)
+++ pkg/vegan/DESCRIPTION	2011-04-27 17:59:14 UTC (rev 1595)
@@ -1,7 +1,7 @@
 Package: vegan
 Title: Community Ecology Package
-Version: 1.18-29
-Date: April 11, 2011
+Version: 1.18-30
+Date: April 27, 2011
 Author: Jari Oksanen, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, 
    Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, 
    M. Henry H. Stevens, Helene Wagner  

Modified: pkg/vegan/inst/ChangeLog
===================================================================
--- pkg/vegan/inst/ChangeLog	2011-04-27 11:52:00 UTC (rev 1594)
+++ pkg/vegan/inst/ChangeLog	2011-04-27 17:59:14 UTC (rev 1595)
@@ -2,8 +2,17 @@
 
 VEGAN DEVEL VERSIONS at http://r-forge.r-project.org/
 
-Version 1.18-29 (opened April 11, 2011)
+Version 1.18-30 (opened April 27, 2011)
 
+	* opened with the release of vegan 1.17-10 on April 27, 2011.
+
+	* nobs: documented nobs() methods for vegan. These seem to be
+	needed in R 2.13.0 and should be released soon (there is no need
+	to add R >= 2.13.0 dependence as long as we do not use these
+	functions ourselves within released vegan code).
+	
+Version 1.18-29 (closed April 27, 2011)
+
 	* capscale: could fail with add = TRUE in R 2.13.0. A kluge was
 	necessary in cmdscale() pre 2.13.0, but the feature was fixed in R
 	2.13.0 and unnecessary fix failed. Now the kluge is used only in

Added: pkg/vegan/man/nobs.adonis.Rd
===================================================================
--- pkg/vegan/man/nobs.adonis.Rd	                        (rev 0)
+++ pkg/vegan/man/nobs.adonis.Rd	2011-04-27 17:59:14 UTC (rev 1595)
@@ -0,0 +1,50 @@
+\name{nobs.adonis}
+\alias{nobs.adonis}
+\alias{nobs.betadisper}
+\alias{nobs.cca}
+\alias{nobs.CCorA}
+\alias{nobs.decorana}
+\alias{nobs.isomap}
+\alias{nobs.metaMDS}
+\alias{nobs.pcnm}
+\alias{nobs.procrustes}
+\alias{nobs.rad}
+\alias{nobs.varpart}
+\alias{nobs.wcmdscale}
+
+\title{
+  Extract the Number of Observations from a vegan Fit.
+}
+\description{
+  Extract the number of \sQuote{observations} from a \pkg{vegan} model fit.
+}
+\usage{
+\method{nobs}{adonis}(object, ...)
+}
+
+\arguments{
+  \item{object}{
+    A fitted model object.
+}
+  \item{\dots}{
+   Further arguments to be passed to methods.
+}
+}
+\details{
+  Function \code{nobs} is generic in \R version 2.13.0, and \pkg{vegan}
+  provides methods for objects of classes \code{\link{adonis}}, 
+  \code{\link{betadisper}}, \code{\link{cca}}, \code{\link{CCorA}}, 
+  \code{\link{decorana}}, \code{\link{isomap}}, \code{\link{metaMDS}},
+  \code{\link{pcnm}}, \code{\link{procrustes}}, \code{\link{rad}},
+  \code{\link{varpart}} and \code{\link{wcmdscale}}.
+}
+\value{
+  A single number, normally an interger, giving the number of observations.
+}
+
+\author{
+  Jari Oksanen
+}
+
+\keyword{models}
+

Modified: pkg/vegan/man/vegan-internal.Rd
===================================================================
--- pkg/vegan/man/vegan-internal.Rd	2011-04-27 11:52:00 UTC (rev 1594)
+++ pkg/vegan/man/vegan-internal.Rd	2011-04-27 17:59:14 UTC (rev 1595)
@@ -10,18 +10,6 @@
 \alias{ordiArrowMul}
 \alias{ordiArgAbsorber}
 \alias{veganCovEllipse}
-\alias{nobs.adonis}
-\alias{nobs.betadisper}
-\alias{nobs.cca}
-\alias{nobs.CCorA}
-\alias{nobs.decorana}
-\alias{nobs.isomap}
-\alias{nobs.metaMDS}
-\alias{nobs.pcnm}
-\alias{nobs.procrustes}
-\alias{nobs.rad}
-\alias{nobs.varpart}
-\alias{nobs.wcmdscale}
 
 \title{Internal vegan functions}