[Vegan-commits] r842 - pkg/vegan/man

[noreply at r-forge.r-project.org]

Author: jarioksa
Date: 2009-05-31 09:58:41 +0200 (Sun, 31 May 2009)
New Revision: 842

Modified:
   pkg/vegan/man/envfit.Rd
Log:
envfit.Rd: example uses 999 permutations instead of 1000

Modified: pkg/vegan/man/envfit.Rd
===================================================================
--- pkg/vegan/man/envfit.Rd	2009-05-31 06:18:25 UTC (rev 841)
+++ pkg/vegan/man/envfit.Rd	2009-05-31 07:58:41 UTC (rev 842)
@@ -160,7 +160,7 @@
 data(varechem)
 library(MASS)
 ord <- metaMDS(varespec)
-(fit <- envfit(ord, varechem, perm = 1000))
+(fit <- envfit(ord, varechem, perm = 999))
 scores(fit, "vectors")
 plot(ord)
 plot(fit)
@@ -169,7 +169,7 @@
 ## that arrows are scaled similarly in cca and envfit plots
 ord <- cca(varespec ~ Al + P + K, varechem)
 plot(ord, type="p")
-fit <- envfit(ord, varechem, perm = 1000, display = "lc")
+fit <- envfit(ord, varechem, perm = 999, display = "lc")
 plot(fit, p.max = 0.05, col = "red")
 ## Class variables, formula interface, and displaying the
 ## inter-class variability with `ordispider'