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<body class='hmmessage'><div dir='ltr'>Dear Léonard,<br><br> thank you for your answer. I am going to try with wcAggregateCases function. It will be the first time I am going to use it. <br><br>Regards,<br><br>Karina<br><br><div><hr id="stopSpelling">From: leonard.moulin@gmail.com<br>Date: Wed, 28 Oct 2015 00:23:00 +0100<br>To: traminer-users@lists.r-forge.r-project.org<br>Subject: Re: [Traminer-users] help<br><br>Dear Karina, <div><br></div><div>I don’t know if Traminer can run with a dataframe of 160,000 rows. You can try to use the wcAggregateCases function of WeightedCluster library. I use it for dataframe with 70,000 sequences, it works but it’s very long… I think that your problem can be solved if you have enough identical sequences.</div><div>In order to do this i work with 16GB of memory RAM (on my computer 8 is not enough - because when i watch terminal usage memory i see sometimes that my computer uses more than 8GB RAM).</div><div><br></div><div>Good luck !</div><div>Léonard. </div><div><br></div><div><br><div><blockquote><div>Le 27 oct. 2015 à 18:08, Karina Videgain <<a href="mailto:karvidegain@hotmail.com">karvidegain@hotmail.com</a>> a écrit :</div><br class="ecxApple-interchange-newline"><div><div dir="ltr" style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;">Hello, I am a new member of the Traminer-users mailing list. I don´t know so well if this is the way to make an answer o share my doubts about Traminer. Nowadays I'm working with a dataframe of 160,000 rows (90MB object). I would like to know an estimated memory required in my laptop. I'm looking for this information in some R blogs but I couldn't find it. I have a Lenovo with 8GB of Memory RAM. In your experience working with R and Traminer, do you think I will be able to manage this object in a sequence analysis?<div><div data-externalstyle="false" dir="ltr" style="font-family:Calibri, 'Segoe UI', Meiryo, 'Microsoft YaHei UI', 'Microsoft JhengHei UI', 'Malgun Gothic', sans-serif;font-size:12pt;"><div data-signatureblock="true"><div><br></div><div>Thanks,</div><div><br></div><div>Karina<br> <span class="ecxApple-converted-space"> </span><br></div></div></div></div></div><span style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;display:inline !important;">_______________________________________________</span><br style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;"><span style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;display:inline !important;">Traminer-users mailing list</span><br style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;"><a href="mailto:Traminer-users@lists.r-forge.r-project.org" style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;">Traminer-users@lists.r-forge.r-project.org</a><br style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;"><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/traminer-users" style="font-family:Calibri;font-size:16px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;" target="_blank">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/traminer-users</a></div></blockquote></div><br></div><br>_______________________________________________
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