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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>Hi all<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>I am analyzing bird song element sequences. I would like to know how can I get how many times a given subsequence is found in single string sequence. <o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>For example:<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>If I have this single sequence:<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><b><span style='font-family:Helvetica;color:#1F497D'>ABC</span></b><span style='font-family:Helvetica;color:#1F497D'>ABABABABABAB<b>ABC</b>AB<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>If I am looking for the subsequence “ABC”. Want I need to get here is that the subsequence is found twice. The function “seqpm” just tell me if the subsequence is there or not.<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>Thanks in advance<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=ES style='font-family:Helvetica;color:#1F497D'>Marcelo Araya-Salas<o:p></o:p></span></p><p class=MsoNormal><span lang=ES style='font-family:Helvetica;color:#1F497D'>Ph.D.</span><span lang=ES style='font-family:Helvetica;color:#1F497D'> </span><span lang=ES style='font-family:Helvetica;color:#1F497D'> </span><span style='font-family:Helvetica;color:#1F497D'>Student<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>Avian Communication and Evolution Lab<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>Department of Biology<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>New Mexico State University<o:p></o:p></span></p><p class=MsoNormal><span style='font-family:Helvetica;color:#1F497D'>Lab: 575-646-4863<o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>