From anna.schweiger at nationalpark.ch Mon Aug 4 20:17:29 2014 From: anna.schweiger at nationalpark.ch (Anna Schweiger) Date: Mon, 4 Aug 2014 20:17:29 +0200 Subject: [tlocoh-info] display tif in background of animation Message-ID: <001801cfb010$5cc651e0$1652f5a0$@schweiger@nationalpark.ch> Hi T-LoCoH list, I'm currently trying to create some animations using lxy.exp.mov. Appendix VI in the tutorial gives very detailed instruction and everything works fine, EXCEPT: I just can't figure out how to display raster data (in .tif format) in the background. Unfortunately, Appendix IV (Displaying Spatial Data in the Background) could not help me .. The first step of creating the animation is: > lxy.exp.mov (all_gams.lxy, id=611, screen.test=TRUE, max.frames=1) For simple plausibility checks during data analysis the following worked fine: > N2010 <- raster ("./N_2010.tif") ### this is the environmental data I want to display in the background of the animation > plot(all_gams.lxy, id=611) > plot(N2010, add=T) Does anybody have an idea? I'm stuck .. Thank you very much for your help! Best whishes, Anna P Please consider the environment before printing this email. -------------- next part -------------- An HTML attachment was scrubbed... URL: From lyons.andy at gmail.com Mon Aug 4 22:56:29 2014 From: lyons.andy at gmail.com (Andy Lyons) Date: Mon, 04 Aug 2014 13:56:29 -0700 Subject: [tlocoh-info] display tif in background of animation In-Reply-To: <53dfce4e.e508450a.63c7.ffff9c1cSMTPIN_ADDED_BROKEN@mx.google.com> References: <53dfce4e.e508450a.63c7.ffff9c1cSMTPIN_ADDED_BROKEN@mx.google.com> Message-ID: <53DFF37D.7010705@gmail.com> Hi Anna, Thanks for your question. The quick answer is that displaying rasters in the background is not currently supported in the lxy.exp.mov() function. This has been on my to-do list for a while, so I'll go ahead and add it and issue a package update later this week. In the interim, if you are interested in a natural earth backdrop you could potentially use lxy.exp.kml() to export a set of time-stamped locations for Google Earth, and play an animation with Google Earth's animation toolbar (and if desired record it using a screen capture program). Cheers, Andy On 8/4/2014 11:17 AM, Anna Schweiger wrote: > > Hi T-LoCoH list, > > I'm currently trying to create some animations using lxy.exp.mov. > > Appendix VI in the tutorial gives very detailed instruction and > everything works fine, EXCEPT: I just can't figure out how to display > raster data (in .tif format) in the background. Unfortunately, > Appendix IV (Displaying Spatial Data in the Background) could not help > me .... > > The first step of creating the animation is: > > > lxy.exp.mov (all_gams.lxy, id=611, screen.test=TRUE, max.frames=1) > > For simple plausibility checks during data analysis the following > worked fine: > > > N2010 <- raster ("./N_2010.tif") ### this is the environmental data I want to > display in the background of the animation > > > plot(all_gams.lxy, id=611) > > > plot(N2010, add=T) > > Does anybody have an idea? I'm stuck .... > > Thank you very much for your help! > > Best whishes, Anna > > PPlease consider the environment before printing this email. > > > > _______________________________________________ > Tlocoh-info mailing list > Tlocoh-info at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/tlocoh-info -------------- next part -------------- An HTML attachment was scrubbed... URL: From lyons.andy at gmail.com Tue Aug 19 05:59:14 2014 From: lyons.andy at gmail.com (Andy Lyons) Date: Mon, 18 Aug 2014 20:59:14 -0700 Subject: [tlocoh-info] T-LoCoH News: Package update; Workshop at TWS Conference In-Reply-To: <53dfce4e.e508450a.63c7.ffff9c1cSMTPIN_ADDED_BROKEN@mx.google.com> References: <53dfce4e.e508450a.63c7.ffff9c1cSMTPIN_ADDED_BROKEN@mx.google.com> Message-ID: <53F2CB92.30303@gmail.com> *T-LoCoH News: Summer 2014* _ _*T-LoCoH Update **Now Available - better support for raster images** *A new version of the T-LoCoH package for R is now available. The main feature improvements in this update are better support for displaying raster images in plots and animations. Changes include: /Changes in Version 1.17 (2014-08-17)/ * lxy.exp.shp() added (exports a LocoH-xy object to shapefile) * Added support for plotting single-band GeoTiff images in the background of LoCoH-xy and LoCoH-hullset objects (including new argument for specifying the display colors, tiff.col) * lxy.exp.mov(): added support for displaying background raster images in an animation of a LoCoH-xy object; new argument for date label fill color; support for mp4 encoding (h.264); and coloring the active point by the hour-of-day * lxy.exp.csv(): Added /dir /argument * readpartgdal: Added a check for the area of overlap and number of bands in a raster * Corrected default title for plots of time-use isopleths * Package /rgdal /moved from 'Imports' to 'Suggests' to simplify installation * New sections & updates to the tutorial * Cleaned up code and numerous other minor changes To update your copy of the package, please run: update.packages(oldPkgs="tlocoh", repos="http://R-Forge.R-project.org") *Workshop on T-LoCoH October 25** * There will be a half-day workshop on T-LoCoH on Saturday October 25, 2014, at The Wildlife Society annual meeting in Pittsburgh, PA. For details and to register, please visit http://wildlifesociety.org/ *Newsletter Article** * The spring 2014 issue of /Remotely Wild/, the newsletter of The Wildlife Society Spatial Ecology and Telemetry Working Group , includes an overview article on T-LoCoH. Please check it out and tell your friends. *Coming Soon**... * More documentation on workflows, parameter selection tools, and HTML reports ========================================== /T-LoCoH: A home range estimation and spatio-temporal analysis method//for location data/ R package, documentation, email list: http://tlocoh.r-forge.r-project.org Please send questions and comments to tlocoh at gmail.com Lyons, A., Turner, W.C., and WM Getz. 2013. /Home range plus: A space-time characterization of movement over real landscapes. BMC Movement Ecology 1:2 , doi:10.1186/2051-3933-1-2 / -------------- next part -------------- An HTML attachment was scrubbed... URL: From batsncats at gmail.com Tue Aug 19 12:40:15 2014 From: batsncats at gmail.com (Bruce Miller) Date: Tue, 19 Aug 2014 06:40:15 -0400 Subject: [tlocoh-info] Unable to update In-Reply-To: References: Message-ID: <53F3298F.7050407@gmail.com> The "update.packages(oldPkgs="tlocoh", repos="http://R-Forge.R-project.org") : Is not working Warning: unable to access index for repository http://R-Forge.R-project.org/bin/windows/contrib/2.15 From anna.schweiger at nationalpark.ch Sun Aug 31 23:20:05 2014 From: anna.schweiger at nationalpark.ch (Anna Schweiger) Date: Sun, 31 Aug 2014 23:20:05 +0200 Subject: [tlocoh-info] Package_Update_Tlocoh-info Digest, Vol 9, Issue 3 In-Reply-To: References: Message-ID: Hi Bruce At first the package update > update.packages(oldPkgs="tlocoh", repos="http://R-Forge.R-project.org") didn?t work for me either, I think because R kept installing the binary version (which is 1.16) and not the new version 1.17 which is source code. What did work was to download the .zip folder from https://r-forge.r-project.org/R/?group_id=1622 and then manually install the new version via the Packages menu on the R console and selecting Install packages from local zip files (see: http://tlocoh.r-forge.r-project.org/manual_install.html). from the console: > install.packages("~/R/win-library/tlocoh_1.17.zip", repos = NULL) package ?tlocoh? successfully unpacked and MD5 sums checked > packageVersion("tlocoh") [1] ?1.17? Maybe this could also solve your problem? Sorry, I?m not the expert but I learned that often people have the same problems :) Best, Anna On Wed, 20 Aug 2014 12:00:08 +0200 tlocoh-info-request at lists.r-forge.r-project.org wrote: > Send Tlocoh-info mailing list submissions to > tlocoh-info at lists.r-forge.r-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/tlocoh-info > > or, via email, send a message with subject or body 'help' to > tlocoh-info-request at lists.r-forge.r-project.org > > You can reach the person managing the list at > tlocoh-info-owner at lists.r-forge.r-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Tlocoh-info digest..." > > > Today's Topics: > > 1. Unable to update (Bruce Miller) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 19 Aug 2014 06:40:15 -0400 >From: Bruce Miller > To: tlocoh-info at lists.r-forge.r-project.org > Subject: [tlocoh-info] Unable to update > Message-ID: <53F3298F.7050407 at gmail.com> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > The "update.packages(oldPkgs="tlocoh", > repos="http://R-Forge.R-project.org") : > Is not working > Warning: unable to access index for repository > http://R-Forge.R-project.org/bin/windows/contrib/2.15 > > > > > > ------------------------------ > > _______________________________________________ > Tlocoh-info mailing list > Tlocoh-info at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/tlocoh-info > > > End of Tlocoh-info Digest, Vol 9, Issue 3 > *****************************************