[Stacomir-commits] r398 - in pkg/stacomir: R man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sat Jun 17 20:26:49 CEST 2017
Author: briand
Date: 2017-06-17 20:26:49 +0200 (Sat, 17 Jun 2017)
New Revision: 398
Modified:
pkg/stacomir/R/PasDeTempsJournalier.r
pkg/stacomir/R/PasdeTemps.r
pkg/stacomir/R/RefAnnee.r
pkg/stacomir/R/RefCheckBox.r
pkg/stacomir/R/RefChoix.r
pkg/stacomir/R/RefDC.r
pkg/stacomir/R/RefDF.r
pkg/stacomir/R/RefHorodate.r
pkg/stacomir/R/RefListe.r
pkg/stacomir/R/RefStades.r
pkg/stacomir/R/RefStationMesure.r
pkg/stacomir/R/RefTaxon.r
pkg/stacomir/R/Refpar.r
pkg/stacomir/R/Refparqual.r
pkg/stacomir/R/ReftextBox.r
pkg/stacomir/R/interface_BilanAgedemer.r
pkg/stacomir/R/interface_BilanAnnuels.r
pkg/stacomir/R/interface_BilanArgentee.r
pkg/stacomir/R/interface_BilanConditionEnv.r
pkg/stacomir/R/interface_BilanEspeces.r
pkg/stacomir/R/interface_BilanFonctionnementDC.r
pkg/stacomir/R/interface_BilanFonctionnementDF.r
pkg/stacomir/R/interface_BilanMigration.r
pkg/stacomir/R/interface_BilanMigrationCar.r
pkg/stacomir/R/interface_BilanMigrationInterannuelle.r
pkg/stacomir/R/interface_BilanMigrationMult.r
pkg/stacomir/R/interface_BilanMigrationMultConditionEnv.r
pkg/stacomir/R/interface_Bilan_carlot.r
pkg/stacomir/R/interface_bilan_poids_moyen.r
pkg/stacomir/man/DateFin-PasDeTemps-method.Rd
pkg/stacomir/man/DateFin.Rd
pkg/stacomir/man/RefListe-class.Rd
pkg/stacomir/man/choice-PasDeTemps-method.Rd
pkg/stacomir/man/choice-PasDeTempsJournalier-method.Rd
pkg/stacomir/man/choice-RefAnnee-method.Rd
pkg/stacomir/man/choice-RefCheckBox-method.Rd
pkg/stacomir/man/choice-RefChoix-method.Rd
pkg/stacomir/man/choice-RefDC-method.Rd
pkg/stacomir/man/choice-RefDF-method.Rd
pkg/stacomir/man/choice-RefHorodate-method.Rd
pkg/stacomir/man/choice-RefListe-method.Rd
pkg/stacomir/man/choice-RefStades-method.Rd
pkg/stacomir/man/choice-RefStationMesure-method.Rd
pkg/stacomir/man/choice-RefTaxon-method.Rd
pkg/stacomir/man/choice-RefTextBox-method.Rd
pkg/stacomir/man/choice-Refpar-method.Rd
pkg/stacomir/man/choice-Refparqual-method.Rd
pkg/stacomir/man/choicemult-PasDeTemps-method.Rd
pkg/stacomir/man/choicemult-RefChoix-method.Rd
pkg/stacomir/man/choicemult-RefHorodate-method.Rd
pkg/stacomir/man/choicemult-RefStades-method.Rd
pkg/stacomir/man/choicemult-Refpar-method.Rd
pkg/stacomir/man/choicemult-Refparqual-method.Rd
pkg/stacomir/man/currentDateDebut-PasDeTemps-method.Rd
pkg/stacomir/man/currentDateDebut.Rd
pkg/stacomir/man/currentDateFin.Rd
pkg/stacomir/man/getAnnees-PasDeTemps-method.Rd
pkg/stacomir/man/getAnnees.Rd
pkg/stacomir/man/getLibellesPas-PasDeTemps-method.Rd
pkg/stacomir/man/getLibellesPas.Rd
pkg/stacomir/man/getdateDebut-PasDeTemps-method.Rd
pkg/stacomir/man/getdateDebut.Rd
pkg/stacomir/man/getnoPasCourant-PasDeTemps-method.Rd
pkg/stacomir/man/interface_BilanAgedemer.Rd
pkg/stacomir/man/interface_BilanAnnuels.Rd
pkg/stacomir/man/interface_BilanArgentee.Rd
pkg/stacomir/man/interface_BilanEspeces.Rd
pkg/stacomir/man/interface_BilanFonctionnementDC.Rd
pkg/stacomir/man/interface_BilanFonctionnementDF.Rd
pkg/stacomir/man/interface_BilanMigration.Rd
pkg/stacomir/man/interface_BilanMigrationInterAnnuelle.Rd
pkg/stacomir/man/interface_BilanMigrationMult.Rd
pkg/stacomir/man/interface_BilanMigrationMultConditionEnv.Rd
pkg/stacomir/man/interface_BilanMigrationPar.Rd
pkg/stacomir/man/interface_BilanPoidsMoyen.Rd
pkg/stacomir/man/interface_Bilan_carlot.Rd
pkg/stacomir/man/interface_ConditionEnv.Rd
pkg/stacomir/man/setRefHorodate-RefHorodate-method.Rd
pkg/stacomir/man/setdateDebut-PasDeTemps-method.Rd
pkg/stacomir/man/setdateDebut.Rd
pkg/stacomir/man/suivant-PasDeTemps-method.Rd
pkg/stacomir/man/suivant.Rd
pkg/stacomir/man/validite_Annee.Rd
pkg/stacomir/man/validite_RefHorodate.Rd
Log:
marking user inteface function as internal, so they are not printed in the index
Modified: pkg/stacomir/R/PasDeTempsJournalier.r
===================================================================
--- pkg/stacomir/R/PasDeTempsJournalier.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/PasDeTempsJournalier.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -58,6 +58,7 @@
#' Method to select timesteps from the graphical interface
#' @param object An object of class \link{PasDeTempsJournalier-class}
+#' @keywords internal
setMethod("choice",signature=signature("PasDeTempsJournalier"),definition=function(object) {
if (length(LesPasDeTemps$LabelPasDeTemps) > 0){
hwinpa=function(h,...){
Modified: pkg/stacomir/R/PasdeTemps.r
===================================================================
--- pkg/stacomir/R/PasdeTemps.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/PasdeTemps.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -133,16 +133,19 @@
#' Gets the current time step of an object of class \link{PasDeTemps-class}
#' @param object An object of class \link{PasDeTemps-class}
#' @return the current time step of the object
+#' @keywords internal
setMethod("getnoPasCourant",signature=signature("PasDeTemps"),definition=function(object) object at noPasCourant)
#' Generic method for getting the final date
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("DateFin",def=function(object,...) standardGeneric("DateFin"))
#' Gets the final horodate for an object of class \link{PasDeTemps-class}
#' @param object An object of class \link{PasDeTemps-class}
#' @return DateFin, The final date corresponding to nbStep*time duration + initial date
#' @export
+#' @keywords internal
setMethod("DateFin",signature=signature("PasDeTemps"),definition=function(object){
DateFin=object at dateDebut+ object at stepDuration*(object at nbStep)
# pour les pb de changement d'heure
@@ -153,10 +156,12 @@
#' Generic method for getting the beginning date for current time step
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("currentDateDebut",def=function(object,...) standardGeneric("currentDateDebut"))
#' Gets the starting date of a time step for an object of class \link{PasDeTemps-class}
#' @param object An object of class \link{PasDeTemps-class}
#' @return CurrentDateDebut, The starting date for the current timestep
+#' @keywords internal
setMethod("currentDateDebut",signature=signature("PasDeTemps"),definition=function(object){
CurrentDateDebut=object at dateDebut+ object at stepDuration*object at noPasCourant
# bug cht heure
@@ -169,6 +174,7 @@
#' Generic method for getting the ending date for current time step
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("currentDateFin",def=function(object,...) standardGeneric("currentDateFin"))
#' Gets the ending date of a time step for an object of class \link{PasDeTemps-class}
#' @param object An object of class \link{PasDeTemps-class}
@@ -184,10 +190,12 @@
#' Generic method next
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("suivant",def=function(object,...) standardGeneric("suivant"))
#' Gets the next time step
#' @param object An object of class \link{PasDeTemps-class}
#' @return An object of class \link{PasDeTemps-class} with current time step set
+#' @keywords internal
setMethod("suivant",signature=signature("PasDeTemps"),definition=function(object){
object at noPasCourant =object at noPasCourant+as.integer(1)
if (currentDateFin(object)>DateFin(object)) {
@@ -199,10 +207,12 @@
#' Generic method the get starting date
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("getdateDebut",def=function(object,...) standardGeneric("getdateDebut"))
#' Returns the starting date as character
#' @param object An object of class \link{PasDeTemps-class}
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setMethod("getdateDebut",signature=signature("PasDeTemps"),definition=function(object){
return ( strftime(as.POSIXlt(object at dateDebut),format="%Y-%m-%d %H:%M:%S") )
})
@@ -211,6 +221,7 @@
#' Generic method to set the starting date
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("setdateDebut",def=function(object,...) standardGeneric("setdateDebut"))
#' Sets starting date from a character
#'
@@ -219,6 +230,7 @@
#' @param string Character string of type"\%Y-\%m-\%d \%H:\%M:\%S" or "\%Y-\%m-\%d".
#' this allows to use either horodate or date
#' @return An object of class \link{PasDeTemps-class}
+#' @keywords internal
setMethod("setdateDebut",signature=signature("PasDeTemps"),definition=function(object,string){
object at dateDebut=if (!is.na(strptime(string,format="%Y-%m-%d %H:%M:%S"))) strptime(string,format="%Y-%m-%d %H:%M:%S") else
strptime(string,format="%Y-%m-%d")
@@ -228,6 +240,7 @@
#' Generic method to get the string value of time step
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("getLibellesPas",def=function(object,...) standardGeneric("getLibellesPas"))
@@ -236,6 +249,7 @@
#'
#' @param object An object of class \link{PasDeTemps-class}
#' @return A string corresponding to the value of current time step
+#' @keywords internal
setMethod("getLibellesPas",signature=signature("PasDeTemps"),definition=function(object){
ret=paste(LesPasDeTemps$LabelPasDeTemps)
return (ret )
@@ -244,10 +258,12 @@
#' Generic method to get the years
#' @param object An object
#' @param ... Additional parameters passed to the method
+#' @keywords internal
setGeneric("getAnnees",def=function(object,...) standardGeneric("getAnnees"))
#' Gets the year or a vector of years corresponding to the timestep ("PasDeTemps") object
#' @param object An object of class \link{PasDeTemps-class}
+#' @keywords internal
setMethod("getAnnees",signature=signature("PasDeTemps"),definition=function(object){
dateFin=DateFin(object)
dateDebut=object at dateDebut
@@ -259,6 +275,7 @@
#' Method to select timesteps from the graphical interface
#' @param object An object of class \link{PasDeTemps-class}
+#' @keywords internal
setMethod("choice",signature=signature("PasDeTemps"),definition=function(object) {
if (length(LesPasDeTemps$LabelPasDeTemps) > 0){
hwinpa=function(h,...){
@@ -308,7 +325,7 @@
#' @note this method differs from choice as it is called within a notebook,
#' it does not allow for multiple choice to be made
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
-
+#' @keywords internal
setMethod("choicemult",signature=signature("PasDeTemps"),definition=function(object) {
if (length(LesPasDeTemps$LabelPasDeTemps) > 0){
hwinpa=function(h,...){
Modified: pkg/stacomir/R/RefAnnee.r
===================================================================
--- pkg/stacomir/R/RefAnnee.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefAnnee.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -6,6 +6,7 @@
#' @param object An object of class \code{\linkS4class{RefAnnee}}
#' @return boolean The test for the object Refannee
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
validite_Annee=function(object)
{
rep1= class(object at data)=="data.frame"
@@ -131,6 +132,7 @@
#' choice(object,nomassign="refAnnee",funoutlabel="essai",titleFrame="essai RefAnnee",preselect=1)
#' dispose(win)
#' }
+#' @keywords internal
setMethod("choice",
signature=signature("RefAnnee"),definition=function(object,
nomassign="refAnnee",
Modified: pkg/stacomir/R/RefCheckBox.r
===================================================================
--- pkg/stacomir/R/RefCheckBox.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefCheckBox.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -43,6 +43,7 @@
#' choice(object)
#' dispose(win)
#' }
+#' @keywords internal
setMethod("choice",signature=signature("RefCheckBox"),definition=function(object) {
hlist=function(h,...){
i=h$action
Modified: pkg/stacomir/R/RefChoix.r
===================================================================
--- pkg/stacomir/R/RefChoix.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefChoix.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -52,6 +52,7 @@
#' group=ggroup(container=win,horizontal=FALSE)
#' choice(object)
#' dispose(win)}
+#' @keywords internal
setMethod("choice",signature=signature("RefChoix"),definition=function(object) {
hlist=function(h,...){
valeurchoisie=svalue(choice)
@@ -100,6 +101,7 @@
#' @param object An object of class \link{RefChoix-class}
#' @param selected_value the value selected in the combo
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
setMethod("choicemult",signature=signature("RefChoix"),definition=function(object,
selected_value
) {
Modified: pkg/stacomir/R/RefDC.r
===================================================================
--- pkg/stacomir/R/RefDC.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefDC.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -99,6 +99,7 @@
#' objectBilan=new("BilanMigration")
#' choice(object=object,objectBilan=objectBilan)
#'}
+#' @keywords internal
setMethod("choice",signature=signature("RefDC"),definition=function(object,objectBilan=NULL,is.enabled=TRUE) {
if (nrow(object at data) > 0){
hDC=function(h,...){
Modified: pkg/stacomir/R/RefDF.r
===================================================================
--- pkg/stacomir/R/RefDF.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefDF.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -79,6 +79,7 @@
#' object<-charge(object)
#' choice(object)
#' }
+#' @keywords internal
setMethod("choice",signature=signature("RefDF"),definition=function(object) {
if (nrow(object at data) > 0){
hDF=function(h,...){
Modified: pkg/stacomir/R/RefHorodate.r
===================================================================
--- pkg/stacomir/R/RefHorodate.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefHorodate.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -2,6 +2,7 @@
#'
#' @param object A refHorodate object
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
validite_RefHorodate=function(object)
{
rep1= class(object at horodate)[2]=="POSIXt"
@@ -42,6 +43,7 @@
#' @param string A string representing an horodate in the format "\%Y-\%m-\%d \%H:\%M:\%S"
#' @return An Object of class "RefHorodate"
#' @author cedric.briand
+#' @keywords internal
setMethod("setRefHorodate",signature=signature("RefHorodate"),definition=function(object,string){
object at horodate=strptime(string,format="%Y-%m-%d %H:%M:%S")
return(object)
@@ -59,6 +61,7 @@
#' @param nomassign The name assigned in environment envir_stacomi
#' @param funoutlabel, text displayed by the interface
#' @param decal Default 0, number of years to shift forward or backward
+#' @keywords internal
#' @return Selects the date in the graphical interface, and assigns an object of class POSIXt with name nomassign in envir_stacomi
setMethod("choice",signature=signature("RefHorodate"),definition=function(object,
label="date",
@@ -175,6 +178,7 @@
#' @param funoutlabel the sentence to write when the choice has been made
#' @param decal Default year will be current year, use -1 to set the default value in the interface to the year before
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
setMethod("choicemult",signature=signature("RefHorodate"),definition=function(object,
label="date",
nomassign="horodate",
Modified: pkg/stacomir/R/RefListe.r
===================================================================
--- pkg/stacomir/R/RefListe.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefListe.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -13,8 +13,7 @@
#' of class \code{"character"}} \item{list("label")}{Object of class
#' \code{"character"}}\item{:}{Object of class \code{"character"}} }
#' @author cedric.briand"at"eptb-vilaine.fr
-
-#' @keywords classes
+#' @keywords internal
#' @family Referential objects
setClass(Class="RefListe",representation= representation(listechoice="character",selectedvalue="character",label="character"))
@@ -48,6 +47,7 @@
#' object<-charge(object,vecteur=c("choice1","choice2"),label="please choose")
#' choice(object)
#' }
+#' @keywords internal
setMethod("choice",signature=signature("RefListe"),definition=function(object,is.enabled=TRUE) {
hlist=function(h,...){
valeurchoisie=svalue(choice)
Modified: pkg/stacomir/R/RefStades.r
===================================================================
--- pkg/stacomir/R/RefStades.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefStades.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -78,6 +78,7 @@
#' objectBilan=bilan_taille # for another test
#' choice(object,objectBilan=bilanMigrationPar)
#' }
+#' @keywords internal
setMethod("choice",signature=signature("RefStades"),definition=function(object,objectBilan=NULL,is.enabled=TRUE) {
if (nrow(object at data) > 0){
hstd=function(h,...){
@@ -168,6 +169,7 @@
#' objectBilan=bilan_taille # for other test
#' choicemult(object,objectBilan=bilanMigrationPar)
#' }
+#' @keywords internal
setMethod("choicemult",signature=signature("RefStades"),definition=function(object,objectBilan=NULL,is.enabled=TRUE) {
if (nrow(object at data) > 0){
Modified: pkg/stacomir/R/RefStationMesure.r
===================================================================
--- pkg/stacomir/R/RefStationMesure.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefStationMesure.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -45,6 +45,7 @@
#' @param is.enabled A boolean parameter, if TRUE the frame is enabled when first displayed
#' @param title The title of the frame, defaut to "Monitoring stations selection"
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
#' @examples
#' \dontrun{
#' object=new("RefStationMesure")
Modified: pkg/stacomir/R/RefTaxon.r
===================================================================
--- pkg/stacomir/R/RefTaxon.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/RefTaxon.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -60,6 +60,7 @@
#' @param objectBilan An object Bilan which includes the \link{RefTaxon-class}, default NULL
#' @param is.enabled Sets if the frame is enabled at launch, defaut TRUE
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
#' @examples \dontrun{
#' object=new("RefTaxon")
#' win=gwindow()
Modified: pkg/stacomir/R/Refpar.r
===================================================================
--- pkg/stacomir/R/Refpar.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/Refpar.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -107,6 +107,7 @@
#' object<-charge(object)
#' choice(object)
#' }
+#' @keywords internal
setMethod("choice",signature=signature("Refpar"),definition=function(object,
label="Choix d'une caracteristique de lot",
nomassign="refpar",
@@ -183,6 +184,7 @@
#' objectBilan=bilan_taille # for other test
#' choicemult(object,objectBilan=bilanMigrationCar)
#' }
+#' @keywords internal
setMethod("choicemult",signature=signature("Refpar"),definition=function(object,
objectBilan=NULL,
label=gettext("Sample characteristic",domain="R-stacomiR"),
Modified: pkg/stacomir/R/Refparqual.r
===================================================================
--- pkg/stacomir/R/Refparqual.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/Refparqual.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -116,6 +116,7 @@
#' object<-charge(object)
#' choice(object)
#' }
+#' @keywords internal
setMethod("choice",signature=signature("Refparqual"),definition=function(object,
label=gettext("Choice of a sample characteristic",domain="R-stacomiR"),
nomassign="refparqual",
@@ -147,6 +148,7 @@
#' @param nomassign The name used when assigning the object Refparqual to the \code{envir_stacomi} environment
#' @param label The name of the frame
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
setMethod("choicemult",signature=signature("Refparqual"),definition=function(object,
objectBilan=NULL,
nomassign="refparqual",
Modified: pkg/stacomir/R/ReftextBox.r
===================================================================
--- pkg/stacomir/R/ReftextBox.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/ReftextBox.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -31,7 +31,7 @@
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
#' @param object An object of class \link{RefTextBox-class}
#' @param nomassign The name with which the object will be assigned in envir_stacomi
-
+#' @keywords internal
#' @examples
#' \dontrun{
#' object=new("RefTextBox")
Modified: pkg/stacomir/R/interface_BilanAgedemer.r
===================================================================
--- pkg/stacomir/R/interface_BilanAgedemer.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanAgedemer.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,6 +1,7 @@
#' An interface that calls the object to build the user interface
#' @note always has to be called within a group constructed and deleted using quitte()
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanAgedemer = function()
{
quitte() # vidange de l'interface
Modified: pkg/stacomir/R/interface_BilanAnnuels.r
===================================================================
--- pkg/stacomir/R/interface_BilanAnnuels.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanAnnuels.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' interface for BilanAnnuels class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanAnnuels = function()
{
quitte() # vidange de l'interface
Modified: pkg/stacomir/R/interface_BilanArgentee.r
===================================================================
--- pkg/stacomir/R/interface_BilanArgentee.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanArgentee.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,6 +1,7 @@
#' An interface that calls the object to build the user interface
#' @note always has to be called within a group constructed and deleted using quitte()
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanArgentee = function()
{
quitte() # vidange de l'interface
Modified: pkg/stacomir/R/interface_BilanConditionEnv.r
===================================================================
--- pkg/stacomir/R/interface_BilanConditionEnv.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanConditionEnv.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' Interface for class conditionEnv
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_ConditionEnv = function()
{
quitte()
Modified: pkg/stacomir/R/interface_BilanEspeces.r
===================================================================
--- pkg/stacomir/R/interface_BilanEspeces.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanEspeces.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' Interface for BilanEspece class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanEspeces=function(){
bilesp=new("BilanEspeces")
assign("bilesp",bilesp,envir = envir_stacomi)
Modified: pkg/stacomir/R/interface_BilanFonctionnementDC.r
===================================================================
--- pkg/stacomir/R/interface_BilanFonctionnementDC.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanFonctionnementDC.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,8 +1,6 @@
-# Nom fichier : interface_BilanFonctionnementDC.R
-
-
#' interface for BilanFonctionnementDC class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanFonctionnementDC = function()
{
quitte()
Modified: pkg/stacomir/R/interface_BilanFonctionnementDF.r
===================================================================
--- pkg/stacomir/R/interface_BilanFonctionnementDF.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanFonctionnementDF.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' interface for BilanFonctionnementDF class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanFonctionnementDF = function()
{
quitte()
Modified: pkg/stacomir/R/interface_BilanMigration.r
===================================================================
--- pkg/stacomir/R/interface_BilanMigration.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanMigration.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,6 +1,7 @@
#' Interface for BilanMigration class, internal use, this function is called
#' by a handler in the main graphical interface
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanMigration=function(){
# the quitte() method removes everything assigned in envir_stacomi by Bilan classes
quitte()
Modified: pkg/stacomir/R/interface_BilanMigrationCar.r
===================================================================
--- pkg/stacomir/R/interface_BilanMigrationCar.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanMigrationCar.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' interface for BilanMigrationPar class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanMigrationPar = function()
{
quitte()
Modified: pkg/stacomir/R/interface_BilanMigrationInterannuelle.r
===================================================================
--- pkg/stacomir/R/interface_BilanMigrationInterannuelle.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanMigrationInterannuelle.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' interface for BilanMigrationInterannuelle class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanMigrationInterAnnuelle = function()
{
quitte() # vidange de l'interface
Modified: pkg/stacomir/R/interface_BilanMigrationMult.r
===================================================================
--- pkg/stacomir/R/interface_BilanMigrationMult.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanMigrationMult.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -3,6 +3,7 @@
#' launches the graphical interface after the main gwidget dialog has been launched
#' This function is called from a handler in the main graphical interface
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanMigrationMult=function(){
quitte() # quitte must be the first in interface methods
#(destroys everything in envir_stacomi except stuff required at to level)
Modified: pkg/stacomir/R/interface_BilanMigrationMultConditionEnv.r
===================================================================
--- pkg/stacomir/R/interface_BilanMigrationMultConditionEnv.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_BilanMigrationMultConditionEnv.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' interface for BilanMigrationConditionEnv class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanMigrationMultConditionEnv = function()
{
quitte()
Modified: pkg/stacomir/R/interface_Bilan_carlot.r
===================================================================
--- pkg/stacomir/R/interface_Bilan_carlot.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_Bilan_carlot.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,6 +1,7 @@
#' An interface that calls the object to build the user interface
#' @note always has to be called within a group constructed and deleted using quitte()
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_Bilan_carlot = function()
{
quitte() # vidange de l'interface
Modified: pkg/stacomir/R/interface_bilan_poids_moyen.r
===================================================================
--- pkg/stacomir/R/interface_bilan_poids_moyen.r 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/R/interface_bilan_poids_moyen.r 2017-06-17 18:26:49 UTC (rev 398)
@@ -1,5 +1,6 @@
#' interface for Bilan_poids_moyen class
#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+#' @keywords internal
interface_BilanPoidsMoyen = function()
{
quitte() # erase the interface
Modified: pkg/stacomir/man/DateFin-PasDeTemps-method.Rd
===================================================================
--- pkg/stacomir/man/DateFin-PasDeTemps-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/DateFin-PasDeTemps-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -16,4 +16,5 @@
\description{
Gets the final horodate for an object of class \link{PasDeTemps-class}
}
+\keyword{internal}
Modified: pkg/stacomir/man/DateFin.Rd
===================================================================
--- pkg/stacomir/man/DateFin.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/DateFin.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -14,4 +14,5 @@
\description{
Generic method for getting the final date
}
+\keyword{internal}
Modified: pkg/stacomir/man/RefListe-class.Rd
===================================================================
--- pkg/stacomir/man/RefListe-class.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/RefListe-class.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -35,5 +35,5 @@
\code{\link{Refperiode-class}},
\code{\link{charge,RefChoix-method}}
}
-\keyword{classes}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-PasDeTemps-method.Rd
===================================================================
--- pkg/stacomir/man/choice-PasDeTemps-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-PasDeTemps-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -13,4 +13,5 @@
\description{
Method to select timesteps from the graphical interface
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-PasDeTempsJournalier-method.Rd
===================================================================
--- pkg/stacomir/man/choice-PasDeTempsJournalier-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-PasDeTempsJournalier-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -13,4 +13,5 @@
\description{
Method to select timesteps from the graphical interface
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefAnnee-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefAnnee-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefAnnee-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -37,4 +37,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefCheckBox-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefCheckBox-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefCheckBox-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -26,4 +26,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefChoix-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefChoix-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefChoix-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -25,4 +25,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefDC-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefDC-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefDC-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -38,4 +38,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefDF-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefDF-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefDF-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -29,4 +29,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefHorodate-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefHorodate-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefHorodate-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -26,4 +26,5 @@
\description{
Graphical interface
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefListe-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefListe-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefListe-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -31,4 +31,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefStades-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefStades-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefStades-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -34,4 +34,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefStationMesure-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefStationMesure-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefStationMesure-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -31,4 +31,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefTaxon-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefTaxon-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefTaxon-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -30,4 +30,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-RefTextBox-method.Rd
===================================================================
--- pkg/stacomir/man/choice-RefTextBox-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-RefTextBox-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -28,4 +28,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-Refpar-method.Rd
===================================================================
--- pkg/stacomir/man/choice-Refpar-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-Refpar-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -43,4 +43,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choice-Refparqual-method.Rd
===================================================================
--- pkg/stacomir/man/choice-Refparqual-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choice-Refparqual-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -41,4 +41,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choicemult-PasDeTemps-method.Rd
===================================================================
--- pkg/stacomir/man/choicemult-PasDeTemps-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choicemult-PasDeTemps-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -20,4 +20,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choicemult-RefChoix-method.Rd
===================================================================
--- pkg/stacomir/man/choicemult-RefChoix-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choicemult-RefChoix-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -18,4 +18,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choicemult-RefHorodate-method.Rd
===================================================================
--- pkg/stacomir/man/choicemult-RefHorodate-method.Rd 2017-06-17 18:24:32 UTC (rev 397)
+++ pkg/stacomir/man/choicemult-RefHorodate-method.Rd 2017-06-17 18:26:49 UTC (rev 398)
@@ -26,4 +26,5 @@
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
+\keyword{internal}
Modified: pkg/stacomir/man/choicemult-RefStades-method.Rd
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/stacomir -r 398
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