[Stacomir-commits] r182 - pkg/stacomir/examples/00_BilanMigration

[noreply at r-forge.r-project.org]

Author: briand
Date: 2016-08-27 12:11:51 +0200 (Sat, 27 Aug 2016)
New Revision: 182

Added:
   pkg/stacomir/examples/00_BilanMigration/Readme.md
   pkg/stacomir/examples/00_BilanMigration/bilanMigration_Arzal.R
Log:


Added: pkg/stacomir/examples/00_BilanMigration/Readme.md
===================================================================
--- pkg/stacomir/examples/00_BilanMigration/Readme.md	                        (rev 0)
+++ pkg/stacomir/examples/00_BilanMigration/Readme.md	2016-08-27 10:11:51 UTC (rev 182)
@@ -0,0 +1,2 @@
+This examples demonstrates the use of the *BilanMigration* class. 
+It comes from the Arzal fishway and includes only one `dc`  `species`and `stage`. It is intended to work without the database installed.

Added: pkg/stacomir/examples/00_BilanMigration/bilanMigration_Arzal.R
===================================================================
--- pkg/stacomir/examples/00_BilanMigration/bilanMigration_Arzal.R	                        (rev 0)
+++ pkg/stacomir/examples/00_BilanMigration/bilanMigration_Arzal.R	2016-08-27 10:11:51 UTC (rev 182)
@@ -0,0 +1,42 @@
+library(stacomiR)
+
+stacomi(gr_interface=FALSE,login_window=FALSE,pre_launch_test=FALSE) 
+## launches the application in the command line
+## here an example of loading
+## not run as the program is possibly not installed
+## this example generates the bM_Arzal dataset
+\dontrun{
+	stacomi(gr_interface=FALSE,
+			login_window=FALSE,
+			pre_launch_test=FALSE)	
+	bM_Arzal=new("BilanMigration")
+	bM_Arzal=choice_c(bM_Arzal,
+			dc=5,
+			taxons=c("Liza ramada"),
+			stades=c("IND"),
+			datedebut="2015-01-01",
+			datefin="2015-12-31")
+	bM_Arzal<-connect(bM_Arzal)
+}
+
+
+data("bM_Arzal")
+# use the following to get the raw data loaded by the connect method
+# not shown there as the database and program might not be installed
+
+#bM_Arzal<-connect(bM_Arzal)
+str(bM_Arzal at data)
+# calculations
+bM_Arzal<-calcule(bM_Arzal)
+#Individual plot for all DC, taxon and stage where data present
+plot(bM_Arzal,plot.type="standard")
+
+#cumulated migration at the station (all stages and DC grouped)
+plot(bM_Arzal,plot.type="step")
+#some plots are a mixture of french and english
+#changing the reference table names to english should shift all to english.
+#same for spanish.
+# combined plot for ggplot2
+plot(bM_Arzal,plot.type="multiple")
+# data will be written in the data directory specified in the stacomi/calcmig.csv file
+summary(bM_Arzal)