[Stacomir-commits] r165 - in pkg: . stacomirtools stacomirtools/R stacomirtools/inst/doc stacomirtools/man

[noreply at r-forge.r-project.org]

Author: briand
Date: 2016-08-19 22:00:10 +0200 (Fri, 19 Aug 2016)
New Revision: 165

Removed:
   pkg/stacomirtools/inst/doc/stacomirtools-manual.pdf
Modified:
   pkg/
   pkg/stacomirtools/
   pkg/stacomirtools/R/ConnectionODBC.r
   pkg/stacomirtools/R/RequeteODBC.r
   pkg/stacomirtools/R/RequeteODBCwhere.r
   pkg/stacomirtools/R/RequeteODBCwheredate.r
   pkg/stacomirtools/R/utilitaires.r
   pkg/stacomirtools/man/killfactor.Rd
Log:



Property changes on: pkg
___________________________________________________________________
Added: svn:mergeinfo
   + /branch0.5:129-161


Property changes on: pkg/stacomirtools
___________________________________________________________________
Deleted: svn:mergeinfo
   - /branch0.5/stacomirtools:129-145

Modified: pkg/stacomirtools/R/ConnectionODBC.r
===================================================================
--- pkg/stacomirtools/R/ConnectionODBC.r	2016-08-19 19:56:13 UTC (rev 164)
+++ pkg/stacomirtools/R/ConnectionODBC.r	2016-08-19 20:00:10 UTC (rev 165)
@@ -19,7 +19,7 @@
 
 #' @title ConnectionODBC class 
 #' @note Mother class for connection, opens the connection but does not shut it
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @slot baseODBC="vector" (of length 3, character)
 #' @slot silent="logical"
 #' @slot etat="ANY" # can be -1 or string
@@ -41,7 +41,7 @@
 
 #' connect method for ConnectionODBC class
 #' @return a connection with slot filled
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @examples object=new("ConnectionODBC")
 #' object at baseODBC=baseODBC
 #' connect(object)
@@ -64,14 +64,14 @@
 							believeNRows = FALSE))
 			if (!exists("odbcConnect")) {
 				if(exists("envir_stacomi")){
-					funout(get("msg",envir_stacomi)$ConnectionODBC.2,arret=TRUE)
+					funout("The RODBC library is necessary, please load the package",arret=TRUE)
 				} else	  {
 					stop("the RODBC library is necessary, please load the package")
 				}
 			}
 			if (!object at silent) {
 				if(exists("envir_stacomi")){
-					print(paste(get("msg",envir_stacomi)$ConnectionODBC.3,object at baseODBC[1]))
+					print(paste("connection trial, warning this class should only be used for test: ",object at baseODBC[1]))
 				} else {
 					print(paste("connection trial, warning this class should only be used for test: ",object at baseODBC[1]))
 				}

Modified: pkg/stacomirtools/R/RequeteODBC.r
===================================================================
--- pkg/stacomirtools/R/RequeteODBC.r	2016-08-19 19:56:13 UTC (rev 164)
+++ pkg/stacomirtools/R/RequeteODBC.r	2016-08-19 20:00:10 UTC (rev 165)
@@ -1,7 +1,7 @@
 # Nom fichier :        RequeteODBC.R 
 #' @title RequeteODBC class 
 #' @note Inherits from ConnectionODBC
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @slot baseODBC="vector" (inherited from ConnectionODBC)
 #' @slot silent="logical" (inherited from ConnectionODBC)
 #' @slot etat="character" (inherited from ConnectionODBC)
@@ -18,7 +18,7 @@
 #' connect method loads a request to the database and returns either an error or a data.frame
 #' @note assign("showmerequest",1,envir=envir_stacomi) permet d'afficher toutes les requetes passant par la classe connect
 #' @return An object of class RequeteODBC
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @expamples 
 #' object=new("RequeteODBC")
 #' object at open=TRUE
@@ -51,7 +51,7 @@
 						if(arret) stop(text) else print(text)
 						return(NULL)
 					}	
-					killfactor=function(df){
+					stacomirtools::killfactor=function(df){
 						for (i in 1:ncol(df))
 						{
 							if(is.factor(df[,i])) df[,i]=as.character(df[,i])
@@ -72,7 +72,7 @@
 					if(arret) stop(text) else print(text)
 					return(NULL)
 				}	
-				killfactor=function(df){
+				stacomirtools::killfactor=function(df){
 					for (i in 1:ncol(df))
 					{
 						if(is.factor(df[,i])) df[,i]=as.character(df[,i])
@@ -124,7 +124,7 @@
 			}
 			if ((class(resultatRequete)=="data.frame")[1]) {
 				if (!object at silent) funout(msg6)
-				object at query=killfactor(query)     # instead of query 11/08/2009 11:55:20
+				object at query=stacomirtools::killfactor(query)     # instead of query 11/08/2009 11:55:20
 				object at etat=msg6
 			} else {
 				if (!object at silent) print(resultatRequete)

Modified: pkg/stacomirtools/R/RequeteODBCwhere.r
===================================================================
--- pkg/stacomirtools/R/RequeteODBCwhere.r	2016-08-19 19:56:13 UTC (rev 164)
+++ pkg/stacomirtools/R/RequeteODBCwhere.r	2016-08-19 20:00:10 UTC (rev 165)
@@ -4,7 +4,7 @@
 #' the syntax is where="WHERE ..."
 #' and =vector("AND...","AND...")
 #' order_by="ORDER BY.."
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @slot select="character"
 #' @slot where="character"
 #' @slot and="vector"
@@ -34,7 +34,7 @@
 #' connect method loads a request to the database and returns either an error or a data.frame
 #' @note method modified from v0.2.1240 to use the connect method of the mother class
 #' @return An object of class RequeteODBCwhere
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @examples 
 #' object<-new("RequeteODBCwhere")
 #' object at baseODBC<-baseODBC

Modified: pkg/stacomirtools/R/RequeteODBCwheredate.r
===================================================================
--- pkg/stacomirtools/R/RequeteODBCwheredate.r	2016-08-19 19:56:13 UTC (rev 164)
+++ pkg/stacomirtools/R/RequeteODBCwheredate.r	2016-08-19 20:00:10 UTC (rev 165)
@@ -42,7 +42,7 @@
 #' connect method loads a request to the database and returns either an error or a data.frame
 #' @note method modified from v0.2.1240 to use the connect method of the mother class which in turn will use the method of the mother class
 #' @return An object of class RequeteODBCwheredate
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @expamples 
 #' object<-new("RequeteODBCwheredate")
 #' object at baseODBC<-baseODBC

Modified: pkg/stacomirtools/R/utilitaires.r
===================================================================
--- pkg/stacomirtools/R/utilitaires.r	2016-08-19 19:56:13 UTC (rev 164)
+++ pkg/stacomirtools/R/utilitaires.r	2016-08-19 20:00:10 UTC (rev 165)
@@ -14,7 +14,7 @@
 #' @param append is the file appended to the previous one ?
 #' @param digits 
 #' @param ... 
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 funhtml=function(data,caption=NULL,top=TRUE,outfile=NULL,clipboard=FALSE,append=TRUE,digits=NULL,...){
 	
 	xt=xtable::xtable(data, caption=caption,digits=digits)
@@ -30,7 +30,7 @@
 #' @param old_variable_name 
 #' @param new_variable_name 
 #' @return object
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
 chnames=function(object,
 		old_variable_name,
@@ -49,7 +49,7 @@
 #' fonction qui renvoit l'index des valeurs apparaissant une seule fois
 #' @param a 
 #' @return the index unique  values within a vector
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
 induk=function(a){
 	sol=match(unique(a),a)     #index des valeurs uniques
@@ -60,9 +60,9 @@
 #' very usefull function used to "kill" these bloody factors that appears, noticeably after loading with odbc
 #' @param df a data.frame
 #' @return df
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
-killfactor=function(df){
+stacomirtools::killfactor=function(df){
 	for (i in 1:ncol(df))
 	{
 		if(is.factor(df[,i])) df[,i]=as.character(df[,i])
@@ -72,7 +72,7 @@
 
 #' ex fonction to write to excel, not used within the program but can still be used
 #' @param d 
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
 ex<-function(d=NULL){
 	if (is.null(d)){
@@ -88,7 +88,7 @@
 #' id.odd function modified from package sma (which did not verify that the entry was indeed an integer)
 #' @param x 
 #' @return a logical
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
 is.odd=function (x) 
 {
@@ -107,7 +107,7 @@
 #' is.even function modified from package sma (which did not verified that the entry was indeed an integer)
 #' @param x 
 #' @return a logical
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
 is.even=function (x) 
 {
@@ -126,7 +126,7 @@
 
 #' Function to transform a ftable into dataframe but just keeping the counts works with ftable of dim 2
 #' @param tab 
-#' @author Cedric Briand \email{cedric.briand@@eptb-vilaine.fr}
+#' @author Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
 #' @export
 tab2df=function(tab){
 	if (length((attributes(tab)$dim))>2) stop("only works with tables of dim 2")

Deleted: pkg/stacomirtools/inst/doc/stacomirtools-manual.pdf
===================================================================
--- pkg/stacomirtools/inst/doc/stacomirtools-manual.pdf	2016-08-19 19:56:13 UTC (rev 164)
+++ pkg/stacomirtools/inst/doc/stacomirtools-manual.pdf	2016-08-19 20:00:10 UTC (rev 165)
@@ -1,4013 +0,0 @@
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/stacomir -r 165