[Stacomir-commits] r157 - branch0.5/stacomir/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Aug 18 14:15:48 CEST 2016
Author: briand
Date: 2016-08-18 14:15:48 +0200 (Thu, 18 Aug 2016)
New Revision: 157
Added:
branch0.5/stacomir/man/BilanMigrationInterAnnuelle-class.Rd
branch0.5/stacomir/man/RefPoidsMoyenPeche-class.Rd
branch0.5/stacomir/man/choix-RefHorodate-method.Rd
Removed:
branch0.5/stacomir/man/RefPoidsMoyenPeche.Rd
branch0.5/stacomir/man/choix.Rd
Modified:
branch0.5/stacomir/man/BilanConditionEnv-class.Rd
branch0.5/stacomir/man/BilanEspeces-class.Rd
branch0.5/stacomir/man/BilanMigration-class.Rd
branch0.5/stacomir/man/BilanMigrationConditionEnv-class.Rd
branch0.5/stacomir/man/BilanMigrationMult-class.Rd
branch0.5/stacomir/man/Bilan_poids_moyen-class.Rd
branch0.5/stacomir/man/Bilan_taille-class.Rd
branch0.5/stacomir/man/PasDeTemps-class.Rd
branch0.5/stacomir/man/PasDeTempsChar-class.Rd
branch0.5/stacomir/man/RefAnnee-class.Rd
branch0.5/stacomir/man/RefCheckBox-class.Rd
branch0.5/stacomir/man/RefChoix-class.Rd
branch0.5/stacomir/man/RefCoe-class.Rd
branch0.5/stacomir/man/RefDC-class.Rd
branch0.5/stacomir/man/RefDF-class.Rd
branch0.5/stacomir/man/RefHorodate-class.Rd
branch0.5/stacomir/man/RefListe-class.Rd
branch0.5/stacomir/man/RefStades-class.Rd
branch0.5/stacomir/man/Refpar-class.Rd
branch0.5/stacomir/man/Refparqual-class.Rd
branch0.5/stacomir/man/Refparquan-class.Rd
branch0.5/stacomir/man/Refperiode-class.Rd
branch0.5/stacomir/man/bMM_Arzal.Rd
branch0.5/stacomir/man/charge-RefChoix-method.Rd
branch0.5/stacomir/man/charge-RefMsg-method.Rd
branch0.5/stacomir/man/connect-BilanFonctionnementDC-method.Rd
branch0.5/stacomir/man/connect-BilanFonctionnementDF-method.Rd
branch0.5/stacomir/man/hBilanConditionEnv.Rd
branch0.5/stacomir/man/hBilanEspeces.Rd
branch0.5/stacomir/man/hBilanLots.Rd
branch0.5/stacomir/man/hBilanMigration.Rd
branch0.5/stacomir/man/hBilanMigrationConditionEnv.Rd
branch0.5/stacomir/man/hBilanMigrationInterAnnuelle.Rd
branch0.5/stacomir/man/hBilanMigrationMult.Rd
branch0.5/stacomir/man/hBilanMigrationPar.Rd
branch0.5/stacomir/man/hDC.Rd
branch0.5/stacomir/man/hDF.Rd
branch0.5/stacomir/man/hDFDC.Rd
branch0.5/stacomir/man/hOPE.Rd
branch0.5/stacomir/man/hSt.Rd
branch0.5/stacomir/man/hTail.Rd
branch0.5/stacomir/man/hbilanMigrationgraph.Rd
branch0.5/stacomir/man/hpds.Rd
branch0.5/stacomir/man/htodo.Rd
branch0.5/stacomir/man/husr.Rd
branch0.5/stacomir/man/interface_graphique.Rd
branch0.5/stacomir/man/stacomi.Rd
Log:
Modified: branch0.5/stacomir/man/BilanConditionEnv-class.Rd
===================================================================
--- branch0.5/stacomir/man/BilanConditionEnv-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/BilanConditionEnv-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/BilanConditionEnv.r
\docType{class}
\name{BilanConditionEnv-class}
-\alias{BilanConditionEnv}
\alias{BilanConditionEnv-class}
\title{class BilanConditionEnv simple output of one or several environmental
conditions...}
Modified: branch0.5/stacomir/man/BilanEspeces-class.Rd
===================================================================
--- branch0.5/stacomir/man/BilanEspeces-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/BilanEspeces-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/BilanEspeces.r
\docType{class}
\name{BilanEspeces-class}
-\alias{BilanEspeces}
\alias{BilanEspeces-class}
\title{Class "BilanEspeces" Report of the species present at a counting device for
a given period}
Modified: branch0.5/stacomir/man/BilanMigration-class.Rd
===================================================================
--- branch0.5/stacomir/man/BilanMigration-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/BilanMigration-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/BilanMigration.r
\docType{class}
\name{BilanMigration-class}
-\alias{BilanMigration}
\alias{BilanMigration-class}
\title{Class "BilanMigration"}
\description{
Modified: branch0.5/stacomir/man/BilanMigrationConditionEnv-class.Rd
===================================================================
--- branch0.5/stacomir/man/BilanMigrationConditionEnv-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/BilanMigrationConditionEnv-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,16 +1,12 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/BilanMigrationConditionEnv.r, R/BilanMigrationInterAnnuelle.r
+% Please edit documentation in R/BilanMigrationConditionEnv.r
\docType{class}
\name{BilanMigrationConditionEnv-class}
-\alias{BilanMigrationConditionEnv}
\alias{BilanMigrationConditionEnv-class}
\title{Class "BilanMigrationConditionEnv"}
\description{
Enables to compute an annual overview of fish migration and environmental
conditions in the same chart
-
-Enables to compute an annual overview of fish migration and environmental
-conditions in the same chart
}
\section{Objects from the Class}{
Objects can be created by calls of the form
@@ -22,35 +18,17 @@
migration overview } \item{list("bilanConditionEnv")}{Object of class
\code{"BilanConditionEnv"} The environmental overview}\item{:}{Object of
class \code{"BilanConditionEnv"} The environmental overview} }
-
- Objects can be created by calls of the form
- \code{new("BilanMigrationConditionEnv",
- bilanMigration=new("BilanMigration"),
- bilanConditionEnv=new("BilanConditionEnv"))}.
-\describe{
- \item{list("bilanMigration")}{Object of class \code{"BilanMigration"} The
- migration overview }\item{:}{Object of class \code{"BilanMigration"} The
- migration overview } \item{list("bilanConditionEnv")}{Object of class
- \code{"BilanConditionEnv"} The environmental overview}\item{:}{Object of
- class \code{"BilanConditionEnv"} The environmental overview} }
}
\examples{
showClass("BilanMigrationConditionEnv")
-
-showClass("BilanMigrationConditionEnv")
-
}
\author{
Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
-
-Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
}
\references{
\url{http://w3.eptb-vilaine.fr:8080/tracstacomi}
-
-\url{http://w3.eptb-vilaine.fr:8080/tracstacomi}
}
\seealso{
Other Bilan Class \code{\linkS4class{Bilan_lot}}
@@ -63,23 +41,8 @@
\code{\linkS4class{BilanMigrationConditionEnv}}
\code{\linkS4class{BilanMigrationInterAnnuelle}}
\code{\linkS4class{BilanMigrationPar}}
-
-Other Bilan Class \code{\linkS4class{Bilan_lot}}
- \code{\linkS4class{Bilan_poids_moyen}}
- \code{\linkS4class{Bilan_stades_pigm}}
- \code{\linkS4class{Bilan_taille}}
- \code{\linkS4class{BilanConditionEnv}}
- \code{\linkS4class{BilanEspeces}}
- \code{\linkS4class{BilanFonctionnementDC}}
- \code{\linkS4class{BilanFonctionnementDF}}
- \code{\linkS4class{BilanMigration}}
- \code{\linkS4class{BilanMigrationConditionEnv}}
- \code{\linkS4class{BilanMigrationInterAnnuelle}}
- \code{\linkS4class{BilanMigrationPar}}
}
\concept{
Bilan Object
-
-Bilan Object
}
Added: branch0.5/stacomir/man/BilanMigrationInterAnnuelle-class.Rd
===================================================================
--- branch0.5/stacomir/man/BilanMigrationInterAnnuelle-class.Rd (rev 0)
+++ branch0.5/stacomir/man/BilanMigrationInterAnnuelle-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -0,0 +1,51 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/BilanMigrationInterAnnuelle.r
+\docType{class}
+\name{BilanMigrationInterAnnuelle-class}
+\alias{BilanMigrationInterAnnuelle-class}
+\title{Class "BilanMigrationConditionEnv"}
+\description{
+Enables to compute an annual overview of fish migration and environmental
+conditions in the same chart
+}
+\section{Objects from the Class}{
+ Objects can be created by calls of the form
+ \code{new("BilanMigrationConditionEnv",
+ bilanMigration=new("BilanMigration"),
+ bilanConditionEnv=new("BilanConditionEnv"))}.
+\describe{
+ \item{list("bilanMigration")}{Object of class \code{"BilanMigration"} The
+ migration overview }\item{:}{Object of class \code{"BilanMigration"} The
+ migration overview } \item{list("bilanConditionEnv")}{Object of class
+ \code{"BilanConditionEnv"} The environmental overview}\item{:}{Object of
+ class \code{"BilanConditionEnv"} The environmental overview} }
+}
+\examples{
+
+showClass("BilanMigrationConditionEnv")
+
+}
+\author{
+Cedric Briand \email{cedric.briand"at"eptb-vilaine.fr}
+}
+\references{
+\url{http://w3.eptb-vilaine.fr:8080/tracstacomi}
+}
+\seealso{
+Other Bilan Class \code{\linkS4class{Bilan_lot}}
+ \code{\linkS4class{Bilan_poids_moyen}}
+ \code{\linkS4class{Bilan_stades_pigm}}
+ \code{\linkS4class{Bilan_taille}}
+ \code{\linkS4class{BilanConditionEnv}}
+ \code{\linkS4class{BilanEspeces}}
+ \code{\linkS4class{BilanFonctionnementDC}}
+ \code{\linkS4class{BilanFonctionnementDF}}
+ \code{\linkS4class{BilanMigration}}
+ \code{\linkS4class{BilanMigrationConditionEnv}}
+ \code{\linkS4class{BilanMigrationInterAnnuelle}}
+ \code{\linkS4class{BilanMigrationPar}}
+}
+\concept{
+Bilan Object
+}
+
Modified: branch0.5/stacomir/man/BilanMigrationMult-class.Rd
===================================================================
--- branch0.5/stacomir/man/BilanMigrationMult-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/BilanMigrationMult-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/BilanMigrationMult.r
\docType{class}
\name{BilanMigrationMult-class}
-\alias{BilanMigrationMult}
\alias{BilanMigrationMult-class}
\title{class BilanMigrationMult}
\description{
@@ -10,7 +9,7 @@
This migration count can be built either by the graphical interface or in command line
\code{new("BilanMigrationMult",
dc=new("RefDC"),taxons=("RefTaxon"),stades=new("RefStades"),pasDeTemps=new("PasDeTempsJournalier"),data=data.frame(),calcdata=list(),
-coef_conversion=data.frame()}.
+coef_conversion=data.frame())}.
}
\section{Slots}{
@@ -34,7 +33,7 @@
A Migration Bilan comes from a migration monitoring : the fishes are monitored in a section of river, this section is
called a control station (station). Most often, there is a dam, one or several fishways (DF) which comprise one or several counting devices (DC).
On each counting device, the migration is recorded. It can be either an instant recording (video control) or the use of traps,
-Operations are monitoring during a period. To each operation, several species of fishes can be recorded (samples). In the case of migratory
+Operations are monitoring operations during a period. For each operation, several species of fishes can be recorded (samples). In the case of migratory
fishes the stage of development is important as it may indicate generic migrations, to and fro, between the river and the sea.
Hence a Multiple Migration Bilan is built from several one or several counting devices (DC), one or several Taxa (Taxon), one or several stages
(stage). The migration can be also recorded not as numbers, but in the case of glass eels, as weight, which will be later transformed to number,
@@ -43,7 +42,7 @@
it uses quantities other than numbers if necessary (only used for glass eel in the connect method).
}
\examples{
-library(stacomiR)
+#library(stacomiR)
# launches the application in the command line
stacomi(gr_interface=FALSE)
# here is the structure of the class
Modified: branch0.5/stacomir/man/Bilan_poids_moyen-class.Rd
===================================================================
--- branch0.5/stacomir/man/Bilan_poids_moyen-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/Bilan_poids_moyen-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/Bilan_poids_moyen.r
\docType{class}
\name{Bilan_poids_moyen-class}
-\alias{Bilan_poids_moyen}
\alias{Bilan_poids_moyen-class}
\title{Class "Bilan_poids_moyen"}
\description{
Modified: branch0.5/stacomir/man/Bilan_taille-class.Rd
===================================================================
--- branch0.5/stacomir/man/Bilan_taille-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/Bilan_taille-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/Bilan_taille.r
\docType{class}
\name{Bilan_taille-class}
-\alias{Bilan_taille}
\alias{Bilan_taille-class}
\title{Class "Bilan_taille" Bilan class}
\description{
Modified: branch0.5/stacomir/man/PasDeTemps-class.Rd
===================================================================
--- branch0.5/stacomir/man/PasDeTemps-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/PasDeTemps-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,30 +2,7 @@
% Please edit documentation in R/PasdeTemps.r
\docType{class}
\name{PasDeTemps-class}
-\alias{DateFin}
-\alias{DateFin,PasDeTemps-method}
-\alias{LesPasDeTemps}
-\alias{PasDeTemps}
\alias{PasDeTemps-class}
-\alias{ValeurPasDeTemps}
-\alias{currentDateDebut}
-\alias{currentDateDebut,PasDeTemps-method}
-\alias{currentDateFin}
-\alias{currentDateFin,PasDeTemps-method}
-\alias{dureePas}
-\alias{getAnnees}
-\alias{getAnnees,PasDeTemps-method}
-\alias{getLibellesPas}
-\alias{getLibellesPas,PasDeTemps-method}
-\alias{getdateDebut}
-\alias{getdateDebut,PasDeTemps-method}
-\alias{getnoPasCourant}
-\alias{getnoPasCourant,PasDeTemps-method}
-\alias{setdateDebut}
-\alias{setdateDebut,PasDeTemps-method}
-\alias{suivant}
-\alias{suivant,PasDeTemps-method}
-\alias{validite_PasDeTemps}
\title{Class "PasDeTemps"}
\description{
Describes a time step
Modified: branch0.5/stacomir/man/PasDeTempsChar-class.Rd
===================================================================
--- branch0.5/stacomir/man/PasDeTempsChar-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/PasDeTempsChar-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,9 +2,7 @@
% Please edit documentation in R/PasdeTemps.r
\docType{class}
\name{PasDeTempsChar-class}
-\alias{PasDeTempsChar}
\alias{PasDeTempsChar-class}
-\alias{validite_PasDeTempsChar}
\title{Class "PasDeTempsChar"}
\description{
Character to represent a PasDeTemps
Modified: branch0.5/stacomir/man/RefAnnee-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefAnnee-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefAnnee-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -48,7 +48,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefCheckBox-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefCheckBox-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefCheckBox-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -54,7 +54,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefChoix-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefChoix-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefChoix-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -53,7 +53,7 @@
\code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefCoe-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefCoe-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefCoe-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -57,7 +57,7 @@
\code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefDC-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefDC-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefDC-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -48,7 +48,7 @@
\code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefDF-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefDF-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefDF-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -51,7 +51,7 @@
\code{\link{RefDC-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefHorodate-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefHorodate-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefHorodate-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -38,7 +38,7 @@
\code{\link{RefChoix-class}}, \code{\link{RefCoe-class}},
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/RefListe-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefListe-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefListe-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/RefListe.r
\docType{class}
\name{RefListe-class}
-\alias{RefListe}
\alias{RefListe-class}
\title{Class "RefListe"}
\description{
@@ -45,7 +44,7 @@
\code{\link{RefChoix-class}}, \code{\link{RefCoe-class}},
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Added: branch0.5/stacomir/man/RefPoidsMoyenPeche-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefPoidsMoyenPeche-class.Rd (rev 0)
+++ branch0.5/stacomir/man/RefPoidsMoyenPeche-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -0,0 +1,54 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/RefPoidsMoyenPeche.r
+\docType{class}
+\name{RefPoidsMoyenPeche-class}
+\alias{RefPoidsMoyenPeche-class}
+\title{Class "RefPoidsMoyenPeche"}
+\description{
+Class which enables to load bunches of elver of experimental fishings
+}
+\section{Objects from the Class}{
+ Objects can be created by calls of the form
+\code{new("RefPoidsMoyenPeche",
+data=data.frame(),datedebut="POSIXlt",datefin="POSIXlt")}. \describe{
+\item{list("data")}{Object of class \code{"data.frame"} ~
+Datas}\item{:}{Object of class \code{"data.frame"} ~ Datas}
+\item{list("datedebut")}{Object of class \code{"POSIXlt"} ~ Starting
+year}\item{:}{Object of class \code{"POSIXlt"} ~ Starting year}
+\item{list("datefin")}{Object of class \code{"POSIXlt"} ~ Ending
+year}\item{:}{Object of class \code{"POSIXlt"} ~ Ending year} }
+}
+\examples{
+
+showClass("RefPoidsMoyenPeche")
+
+}
+\author{
+cedric.briand"at"eptb-vilaine.fr
+}
+\seealso{
+Other referential classes \code{\linkS4class{RefAnnee}}
+\code{\linkS4class{RefCheckBox}} \code{\linkS4class{RefChoix}}
+\code{\linkS4class{RefCoe}} \code{\linkS4class{RefDC}}
+\code{\linkS4class{RefDF}} \code{\linkS4class{RefListe}}
+\code{\linkS4class{Refpar}} \code{\linkS4class{Refparqual}}
+\code{\linkS4class{Refparquan}} \code{\linkS4class{RefPoidsMoyenPeche}}
+\code{\linkS4class{RefStades}} \code{\linkS4class{RefStationMesure}}
+\code{\linkS4class{RefTaxon}}
+
+Other Referential objects: \code{\link{RefAnnee-class}},
+ \code{\link{RefCheckBox-class}},
+ \code{\link{RefChoix-class}}, \code{\link{RefCoe-class}},
+ \code{\link{RefDC-class}}, \code{\link{RefDF-class}},
+ \code{\link{RefHorodate-class}},
+ \code{\link{RefListe-class}},
+ \code{\link{RefStades-class}},
+ \code{\link{Refpar-class}},
+ \code{\link{Refparqual-class}},
+ \code{\link{Refparquan-class}},
+ \code{\link{Refperiode-class}},
+ \code{\link{charge,RefChoix-method}},
+ \code{\link{charge,RefMsg-method}}
+}
+\keyword{classes}
+
Deleted: branch0.5/stacomir/man/RefPoidsMoyenPeche.Rd
===================================================================
--- branch0.5/stacomir/man/RefPoidsMoyenPeche.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefPoidsMoyenPeche.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,55 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/RefPoidsMoyenPeche.r
-\docType{class}
-\name{RefPoidsMoyenPeche}
-\alias{RefPoidsMoyenPeche}
-\alias{RefPoidsMoyenPeche-class}
-\title{Class "RefPoidsMoyenPeche"}
-\description{
-Class which enables to load bunches of elver of experimental fishings
-}
-\section{Objects from the Class}{
- Objects can be created by calls of the form
-\code{new("RefPoidsMoyenPeche",
-data=data.frame(),datedebut="POSIXlt",datefin="POSIXlt")}. \describe{
-\item{list("data")}{Object of class \code{"data.frame"} ~
-Datas}\item{:}{Object of class \code{"data.frame"} ~ Datas}
-\item{list("datedebut")}{Object of class \code{"POSIXlt"} ~ Starting
-year}\item{:}{Object of class \code{"POSIXlt"} ~ Starting year}
-\item{list("datefin")}{Object of class \code{"POSIXlt"} ~ Ending
-year}\item{:}{Object of class \code{"POSIXlt"} ~ Ending year} }
-}
-\examples{
-
-showClass("RefPoidsMoyenPeche")
-
-}
-\author{
-cedric.briand"at"eptb-vilaine.fr
-}
-\seealso{
-Other referential classes \code{\linkS4class{RefAnnee}}
-\code{\linkS4class{RefCheckBox}} \code{\linkS4class{RefChoix}}
-\code{\linkS4class{RefCoe}} \code{\linkS4class{RefDC}}
-\code{\linkS4class{RefDF}} \code{\linkS4class{RefListe}}
-\code{\linkS4class{Refpar}} \code{\linkS4class{Refparqual}}
-\code{\linkS4class{Refparquan}} \code{\linkS4class{RefPoidsMoyenPeche}}
-\code{\linkS4class{RefStades}} \code{\linkS4class{RefStationMesure}}
-\code{\linkS4class{RefTaxon}}
-
-Other Referential objects: \code{\link{RefAnnee-class}},
- \code{\link{RefCheckBox-class}},
- \code{\link{RefChoix-class}}, \code{\link{RefCoe-class}},
- \code{\link{RefDC-class}}, \code{\link{RefDF-class}},
- \code{\link{RefHorodate-class}},
- \code{\link{RefListe-class}},
- \code{\link{RefStades-class}},
- \code{\link{Refpar-class}},
- \code{\link{Refparqual-class}},
- \code{\link{Refparquan-class}},
- \code{\link{Refperiode-class}},
- \code{\link{charge,RefChoix-method}},
- \code{\link{charge,RefMsg-method}}
-}
-\keyword{classes}
-
Modified: branch0.5/stacomir/man/RefStades-class.Rd
===================================================================
--- branch0.5/stacomir/man/RefStades-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/RefStades-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/RefStades.r
\docType{class}
\name{RefStades-class}
-\alias{RefStades}
\alias{RefStades-class}
\title{Class "RefStades"}
\description{
@@ -39,7 +38,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
\code{\link{Refparquan-class}},
Modified: branch0.5/stacomir/man/Refpar-class.Rd
===================================================================
--- branch0.5/stacomir/man/Refpar-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/Refpar-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/Refpar.r
\docType{class}
\name{Refpar-class}
-\alias{Refpar}
\alias{Refpar-class}
\title{Class "Refpar"}
\description{
@@ -44,7 +43,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refparqual-class}},
\code{\link{Refparquan-class}},
Modified: branch0.5/stacomir/man/Refparqual-class.Rd
===================================================================
--- branch0.5/stacomir/man/Refparqual-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/Refparqual-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/Refparqual.r
\docType{class}
\name{Refparqual-class}
-\alias{Refparqual}
\alias{Refparqual-class}
\title{Class "Refparqual"}
\description{
@@ -46,7 +45,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparquan-class}},
Modified: branch0.5/stacomir/man/Refparquan-class.Rd
===================================================================
--- branch0.5/stacomir/man/Refparquan-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/Refparquan-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/Refparquan.r
\docType{class}
\name{Refparquan-class}
-\alias{Refparquan}
\alias{Refparquan-class}
\title{Class "Refparquan"}
\description{
@@ -40,7 +39,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/Refperiode-class.Rd
===================================================================
--- branch0.5/stacomir/man/Refperiode-class.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/Refperiode-class.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -2,7 +2,6 @@
% Please edit documentation in R/Refperiode.r
\docType{class}
\name{Refperiode-class}
-\alias{Refperiode}
\alias{Refperiode-class}
\title{Class "Refperiode" referential class}
\description{
@@ -32,7 +31,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/bMM_Arzal.Rd
===================================================================
--- branch0.5/stacomir/man/bMM_Arzal.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/bMM_Arzal.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -25,8 +25,8 @@
}
}
\item{calcdata}{slot to be filled with the calcule method}
- \item{coef_conversion} {A data frame with 364 observations with daily coefficients to convert from weight to numbers}
- \item{time.sequence} {A time sequence generated for the bilan, used internally by the object}
+ \item{coef_conversion}{A data frame with 364 observations with daily coefficients to convert from weight to numbers}
+ \item{time.sequence}{A time sequence generated for the bilan, used internally by the object}
}}
\usage{
bMM_Arzal
Modified: branch0.5/stacomir/man/charge-RefChoix-method.Rd
===================================================================
--- branch0.5/stacomir/man/charge-RefChoix-method.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/charge-RefChoix-method.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -33,7 +33,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Modified: branch0.5/stacomir/man/charge-RefMsg-method.Rd
===================================================================
--- branch0.5/stacomir/man/charge-RefMsg-method.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/charge-RefMsg-method.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -27,7 +27,7 @@
\code{\link{RefDC-class}}, \code{\link{RefDF-class}},
\code{\link{RefHorodate-class}},
\code{\link{RefListe-class}},
- \code{\link{RefPoidsMoyenPeche}},
+ \code{\link{RefPoidsMoyenPeche-class}},
\code{\link{RefStades-class}},
\code{\link{Refpar-class}},
\code{\link{Refparqual-class}},
Added: branch0.5/stacomir/man/choix-RefHorodate-method.Rd
===================================================================
--- branch0.5/stacomir/man/choix-RefHorodate-method.Rd (rev 0)
+++ branch0.5/stacomir/man/choix-RefHorodate-method.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/RefHorodate.r
+\docType{methods}
+\name{choix,RefHorodate-method}
+\alias{choix,RefHorodate-method}
+\title{choix method for RefHorodate}
+\usage{
+\S4method{choix}{RefHorodate}(object, label = "date",
+ nomassign = "horodate",
+ funoutlabel = "nous avons le choix dans la date\\n", decal = 0,
+ affichecal = TRUE)
+}
+\value{
+Selects the date in the graphical interface
+}
+\description{
+choix method for RefHorodate
+}
+\author{
+cedric.briand
+}
+
Deleted: branch0.5/stacomir/man/choix.Rd
===================================================================
--- branch0.5/stacomir/man/choix.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/choix.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,22 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/RefHorodate.r
-\docType{methods}
-\name{choix}
-\alias{choix}
-\title{choix method for RefHorodate}
-\usage{
-\S4method{choix}{RefHorodate}(object, label = "date",
- nomassign = "horodate",
- funoutlabel = "nous avons le choix dans la date\\n", decal = 0,
- affichecal = TRUE)
-}
-\value{
-Selects the date in the graphical interface
-}
-\description{
-choix method for RefHorodate
-}
-\author{
-cedric.briand
-}
-
Modified: branch0.5/stacomir/man/connect-BilanFonctionnementDC-method.Rd
===================================================================
--- branch0.5/stacomir/man/connect-BilanFonctionnementDC-method.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/connect-BilanFonctionnementDC-method.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -8,7 +8,7 @@
\S4method{connect}{BilanFonctionnementDC}(object, h)
}
\value{
-An object of class \ref{BilanFonctionnementDC}
+An object of class \code{BilanFonctionnementDC}
}
\description{
loads the working periods and type of arrest or disfunction of the DC
Modified: branch0.5/stacomir/man/connect-BilanFonctionnementDF-method.Rd
===================================================================
--- branch0.5/stacomir/man/connect-BilanFonctionnementDF-method.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/connect-BilanFonctionnementDF-method.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -8,7 +8,7 @@
\S4method{connect}{BilanFonctionnementDF}(object, h)
}
\value{
-An object of class \ref{BilanFonctionnementDF}
+An object of class \code{BilanFonctionnementDF}
}
\description{
loads the working periods and type of arrest or disfunction of the DF
Modified: branch0.5/stacomir/man/hBilanConditionEnv.Rd
===================================================================
--- branch0.5/stacomir/man/hBilanConditionEnv.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/hBilanConditionEnv.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/interface_graphique.r
+% Please edit documentation in R/stacomi.r
\name{hBilanConditionEnv}
\alias{hBilanConditionEnv}
\title{handler function used by the main interface}
Modified: branch0.5/stacomir/man/hBilanEspeces.Rd
===================================================================
--- branch0.5/stacomir/man/hBilanEspeces.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/hBilanEspeces.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/interface_graphique.r
+% Please edit documentation in R/stacomi.r
\name{hBilanEspeces}
\alias{hBilanEspeces}
\title{handler function used by the main interface}
Modified: branch0.5/stacomir/man/hBilanLots.Rd
===================================================================
--- branch0.5/stacomir/man/hBilanLots.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/hBilanLots.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/interface_graphique.r
+% Please edit documentation in R/stacomi.r
\name{hBilanLots}
\alias{hBilanLots}
\title{handler function used by the main interface}
Modified: branch0.5/stacomir/man/hBilanMigration.Rd
===================================================================
--- branch0.5/stacomir/man/hBilanMigration.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/hBilanMigration.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/interface_graphique.r
+% Please edit documentation in R/stacomi.r
\name{hBilanMigration}
\alias{hBilanMigration}
\title{handler function used by the main interface}
Modified: branch0.5/stacomir/man/hBilanMigrationConditionEnv.Rd
===================================================================
--- branch0.5/stacomir/man/hBilanMigrationConditionEnv.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/hBilanMigrationConditionEnv.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/interface_graphique.r
+% Please edit documentation in R/stacomi.r
\name{hBilanMigrationConditionEnv}
\alias{hBilanMigrationConditionEnv}
\title{handler function used by the main interface}
Modified: branch0.5/stacomir/man/hBilanMigrationInterAnnuelle.Rd
===================================================================
--- branch0.5/stacomir/man/hBilanMigrationInterAnnuelle.Rd 2016-08-18 10:35:31 UTC (rev 156)
+++ branch0.5/stacomir/man/hBilanMigrationInterAnnuelle.Rd 2016-08-18 12:15:48 UTC (rev 157)
@@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/interface_graphique.r
+% Please edit documentation in R/stacomi.r
\name{hBilanMigrationInterAnnuelle}
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/stacomir -r 157
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