From noreply at r-forge.r-project.org Thu Apr 17 16:31:03 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Thu, 17 Apr 2014 16:31:03 +0200 (CEST) Subject: [Soiltexture-commits] r104 - / pkg/ternaryplot/R Message-ID: <20140417143104.173AA186DDF@r-forge.r-project.org> Author: jmoeys Date: 2014-04-17 16:31:03 +0200 (Thu, 17 Apr 2014) New Revision: 104 Modified: pkg/ternaryplot/R/ternarygrid.R ternaryplot_ToDoList.TXT Log: Modified: pkg/ternaryplot/R/ternarygrid.R =================================================================== --- pkg/ternaryplot/R/ternarygrid.R 2014-03-28 16:50:31 UTC (rev 103) +++ pkg/ternaryplot/R/ternarygrid.R 2014-04-17 14:31:03 UTC (rev 104) @@ -185,7 +185,7 @@ x, ... ){ - s <- x[["ternarySystem"]] + s <- x[[ "ternarySystem" ]] x <- x[[ "grid" ]] x <- x[ order( x[, "id"] ), ] id <- x[, "id" ] @@ -193,6 +193,7 @@ .blrNames <- blrNames( s ) + # Transform from Top-Left-Right to X-Y xy <- ternary2xy( s = s, x = x[, .blrNames ] ) xy <- split( x = xy, f = as.factor( id ) ) Modified: ternaryplot_ToDoList.TXT =================================================================== --- ternaryplot_ToDoList.TXT 2014-03-28 16:50:31 UTC (rev 103) +++ ternaryplot_ToDoList.TXT 2014-04-17 14:31:03 UTC (rev 104) @@ -56,10 +56,14 @@ ternaryGrid ternarySystem ternaryPlot data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) + TO DO: type = "p" points, "l" lines, "b" both, "c" counts, "de" density, "di" distance (contour chosen via "...") + TO DO: facet = {category}, fCol, fPch, zCol, zCex + TO DO: make axes ticks depend on axTicks() + TO DO: make arrows and arrows labels distance from the plot a function of margin size using par("plt") and *backward* calculating the label position @@ -71,11 +75,11 @@ that gives the Y-distance between the triangle frame and the axis labels (4) Using that distance to position the other two axis arrows and labels - ternaryLims data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) + ternaryLims data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) deg2rad - ternary2xy data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) - ternaryClockSwitch data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) - ternaryText data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) + ternary2xy data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) + ternaryClockSwitch data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) + ternaryText data.frame matrix >> make function of "ternarySystem character" (+ internal 'data' handling) .ternaryAxisArrowsBase ternarySystem .ternaryAxisArrows ternarySystem From noreply at r-forge.r-project.org Wed Apr 23 15:50:06 2014 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Wed, 23 Apr 2014 15:50:06 +0200 (CEST) Subject: [Soiltexture-commits] r105 - / pkg/soiltexture pkg/soiltexture/R pkg/soiltexture/man pkg/soiltexture/tests pkg/soiltexture/vignettes Message-ID: <20140423135006.C0BED186FEA@r-forge.r-project.org> Author: jmoeys Date: 2014-04-23 15:50:06 +0200 (Wed, 23 Apr 2014) New Revision: 105 Modified: pkg/soiltexture/DESCRIPTION pkg/soiltexture/NEWS pkg/soiltexture/R/soiltexture.R pkg/soiltexture/man/TT.plot.Rd pkg/soiltexture/man/soiltexture-package.Rd pkg/soiltexture/tests/TT.plot.R pkg/soiltexture/vignettes/soiltexture_vignette.Rnw pkg/soiltexture/vignettes/soiltexture_vignette.bib soiltexture_2_RCMDcheck_noexamples.bat soiltexture_3_RCMDINSTALL_build.BAT soiltexture_compile.R Log: added Whitney 191 USDA texture triangle Modified: pkg/soiltexture/DESCRIPTION =================================================================== --- pkg/soiltexture/DESCRIPTION 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/DESCRIPTION 2014-04-23 13:50:06 UTC (rev 105) @@ -1,6 +1,6 @@ Package: soiltexture -Version: 1.2.13 -Date: 2014-01-10 +Version: 1.2.14 +Date: 2014-04-23 Title: Functions for soil texture plot, classification and transformation Author: Julien MOEYS , contributions from Wei Shangguan. Maintainer: Julien MOEYS Modified: pkg/soiltexture/NEWS =================================================================== --- pkg/soiltexture/NEWS 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/NEWS 2014-04-23 13:50:06 UTC (rev 105) @@ -3,6 +3,12 @@ Julien MOEYS ----------------------------------------------------------------- +VERSION 1.2.14 + + 2014/04/23 Added texture triangle from Whitney 1911 (USDA) + (courtesy of Nic Jelinski, University of Minnesota, + USA) + VERSION 1.2.13 2014/01/10 A mistake has been corrected in the texture triangle Modified: pkg/soiltexture/R/soiltexture.R =================================================================== --- pkg/soiltexture/R/soiltexture.R 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/R/soiltexture.R 2014-04-23 13:50:06 UTC (rev 105) @@ -1386,12 +1386,79 @@ unit.tx = quote(bold('%')), # text.sum = 100 - ) # - # + ), + + "USDA1911" = list( + # USDA 1911 (M. Whitney, 1911) + # Courtesy of Nic Jelinski University of Minnesota, USA + # 2014-04-23 + + "main" = "USDA 1911 (M. Whitney, 1911) - Ternary Plot", + + "tt.points" = read.table( sep = "", header = TRUE, + text = "CLAY SILT SAND + 0.0 0.0 1.0 # 1 + 0.2 0.0 0.8 # 2 + 0.0 0.2 0.8 # 3 + 0.5 0.0 0.5 # 4 + 0.3 0.2 0.5 # 5 + 0.2 0.3 0.5 # 6 + 0.0 0.5 0.5 # 7 + 0.2 0.5 0.3 # 8 + 0.3 0.5 0.2 # 9 + 0.3 0.7 0.0 # 10 + 0.2 0.8 0.0 # 11 + 0.0 1.0 0.0 # 12 + 1.0 0.0 0.0" ), # 13 + + "tt.polygons" = list( + "C" = list( + "name" = "Clay", + "points" = c( 4, 13, 10, 5 ) + ), + "SaC" = list( # INSTEAD OF SC (can be mistaken for Silty Clay) + "name" = "Sandy Clay", + "points" = c( 2, 4, 5 ) + ), + "CL" = list( + "name" = "Clay Loam", + "points" = c( 5, 9, 8, 6 ) + ), + "SaCL" = list( # INSTEAD OF SiCL + "name" = "Sandy Clay Loam", + "points" = c( 8, 9, 10, 11 ) + ), + "L" = list( + "name" = "Loam", + "points" = c( 7, 6, 8 ) + ), + "SiL" = list( + "name" = "Silt Loam", + "points" = c( 7, 8, 11, 12 ) + ), + "SaL" = list( # INSTEAD OF SL (can be mistaken for Silty Loam) + "name" = "Sandy Loam", + "points" = c( 3, 2, 5, 7 ) + ), + "Sa" = list( # INSTEAD OF S (Can be mistaken for Silt) + "name" = "Sand", + "points" = c( 1, 2, 3 ) + ) + ), + "blr.clock" = c( FALSE, TRUE, NA ), + "tlr.an" = c( 45, 90, 45 ), + "blr.tx" = c( "SILT", "CLAY", "SAND" ), + "base.css.ps.lim" = c( 0, 5, 50, 2000 ), + "tri.css.ps.lim" = c( 0, 5, 50, 2000 ), + "unit.ps" = quote( bold( mu ) * bold( "m" ) ), + "unit.tx" = quote( bold( "%" ) ), + "text.sum" = 100 + ) + # +-------------------------------------------------------------------------+ # | END(SCRIPT PARAMETERS SPECIFICATION) | # +-------------------------------------------------------------------------+ - # + ) # ) # Modified: pkg/soiltexture/man/TT.plot.Rd =================================================================== --- pkg/soiltexture/man/TT.plot.Rd 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/man/TT.plot.Rd 2014-04-23 13:50:06 UTC (rev 105) @@ -870,6 +870,8 @@ TT.plot( class.sys = "DE.TGL85.TT" ) # German TGL 1985 +TT.plot( class.sys = "USDA1911" ) # USDA 1911 (M. Whitney, 1911) + Modified: pkg/soiltexture/man/soiltexture-package.Rd =================================================================== --- pkg/soiltexture/man/soiltexture-package.Rd 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/man/soiltexture-package.Rd 2014-04-23 13:50:06 UTC (rev 105) @@ -34,9 +34,9 @@ \tabular{ll}{Package: \tab soiltexture\cr -Version: \tab 1.2.13\cr +Version: \tab 1.2.14\cr -Date: \tab 2014-01-10\cr +Date: \tab 2014-04-23\cr Title: \tab Functions for soil texture plot, classification and transformation\cr Modified: pkg/soiltexture/tests/TT.plot.R =================================================================== --- pkg/soiltexture/tests/TT.plot.R 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/tests/TT.plot.R 2014-04-23 13:50:06 UTC (rev 105) @@ -70,6 +70,7 @@ try( TT.plot( class.sys = "PL.TT" ) ) # Polish TT.plot( class.sys = "DE.SEA74.TT" ) # German SEA 1974 TT.plot( class.sys = "DE.TGL85.TT" ) # German TGL 1985 +TT.plot( class.sys = "USDA1911" ) # USDA 1911 (M. Whitney, 1911) # ::: Test all the languages: Modified: pkg/soiltexture/vignettes/soiltexture_vignette.Rnw =================================================================== --- pkg/soiltexture/vignettes/soiltexture_vignette.Rnw 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/vignettes/soiltexture_vignette.Rnw 2014-04-23 13:50:06 UTC (rev 105) @@ -835,6 +835,46 @@ % +~~~~~~~~~~~~~~~~~~~~~~~~~~~~+ +\subsection{Whitney 1911 USDA soil texture classification} + +To display a Whitney (1911) version of the USDA texture triangle, +type: + + +<>= +TT.plot( class.sys = "USDA1911" ) +@ + + +The Whitney USDA 1911 soil texture triangle has been built +considering a silt - sand limit of +\Sexpr{TT.get("USDA1911")[["base.css.ps.lim"]][3]}$\mu$meters, +and a \textbf{clay - silt limit of +\Sexpr{TT.get("USDA1911")[["base.css.ps.lim"]][2]}$\mu$meters +(Notice the difference with the actual USDA triangle)}\\ + +See the table for soil texture classes symbols.\\ + + +<>= +tex.tbl <- TT.classes.tbl( class.sys = "USDA1911" ) +xtable( + x = tex.tbl[, -3 ], # + caption = "Texture classes of the Whitney 1911 system / triangle", + label = NULL +) # +@ + + +This triangle has been kindly digitised and provided by Nic +Jelinski (University of Minnesota, USA). The original reference +used to digitise this triangle is the Whitney 1911\cite{WHITNEY1911}. + +\clearpage % otherwise the table may 'eats' next triangle + + + +% +~~~~~~~~~~~~~~~~~~~~~~~~~~~~+ \subsection{The European Soil Map (HYPRES) soil texture classification} \textbf{NOTE: I had previously erroneously named that system Modified: pkg/soiltexture/vignettes/soiltexture_vignette.bib =================================================================== --- pkg/soiltexture/vignettes/soiltexture_vignette.bib 2014-04-17 14:31:03 UTC (rev 104) +++ pkg/soiltexture/vignettes/soiltexture_vignette.bib 2014-04-23 13:50:06 UTC (rev 105) @@ -1,4 +1,4 @@ -% This file was created with JabRef 2.5. +% This file was created with JabRef 2.9.2. % Encoding: Cp1252 @MISC{CANSIS2010, @@ -23,6 +23,18 @@ url = {http://nibis.ni.schule.de/\~{}trianet/soil/boden5.htm} } + at MISC{BOSSUYT2009, + author = {Bart {Van Bossuyt}}, + title = {De Belgische Textuurdriehoek}, + howpublished = {website}, + month = {last checked 2009/10/14}, + year = {2009}, + note = {\texttt{http://www.begeleidzelfstandigleren.com/aardrijkskunde/losse\_animaties/textuurdriehoek\_bodems.html}}, + owner = {root}, + timestamp = {2009.10.14}, + url = {http://www.begeleidzelfstandigleren.com/aardrijkskunde/losse\_animaties/textuurdriehoek\_bodems.html} +} + @MISC{CANSIS2009, author = {Anonymous}, title = {The Canadian Soil Information System (CanSIS) -- National Soil DataBase @@ -36,58 +48,6 @@ url = {http://sis.agr.gc.ca/cansis/nsdb/lpdb/faotext.html} } - at MISC{WIKIPEDIADE2009, - author = {Anonymous}, - title = {Fingerprobe (Boden)}, - howpublished = {Website (Wikipedia.de)}, - year = {2009}, - note = {Last access 2009/08/24.\texttt{http://de.wikipedia.org/wiki/Fingerprobe\_\%28Boden\%29}}, - owner = {root}, - timestamp = {2009.08.24}, - url = {http://de.wikipedia.org/wiki/Fingerprobe\_\%28Boden\%29} -} - - at BOOK{BAIZE1995, - title = {Guide pour la description des sols}, - publisher = {INRA}, - year = {1995}, - author = {D. Baize and B. Jabiol}, - series = {col. Techniques et pratiques.}, - note = {375 p.}, - owner = {root}, - timestamp = {2009.08.24} -} - - at ARTICLE{BORMANN2007, - author = {H. Bormann}, - title = {Analysis of the suitability of the German soil texture classification - for the regional scale application of physical based hydrological - model}, - journal = {Advances in Geosciences}, - year = {2007}, - volume = {11}, - pages = {7--13}, - note = {\texttt{www.adv-geosci.net/11/7/2007/}}, - owner = {root}, - timestamp = {2009.08.22}, - url = {www.adv-geosci.net/11/7/2007/} -} - - at ARTICLE{TEH1996, - author = {T.B.S. Christopher and A.M. Mokhtaruddin}, - title = {A computer program to determine the soil textural class in 1-2-3 - for windows and excel}, - journal = {Communications in Soil Science and Plant Analysis}, - year = {1996}, - volume = {27}, - pages = {2315--2319}, - number = {9 and 10}, - note = {\texttt{http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a905339412\~{}tab=linking}}, - owner = {julienm}, - timestamp = {2009.08.19}, - url = {http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a905339412\~{}tab=linking} -} - @MISC{DEFOURNY2009, author = {Defourny and Delvaux and Ducarme and Radoux}, title = {Travaux pratiques de cartographie du sol}, @@ -100,18 +60,6 @@ url = {http://www.icampus.ucl.ac.be/courses/MILA2230/document/texture.html} } - at TECHREPORT{DEFRA2006, - author = {{Defra -- Rural Development Service -- Technical Advice Unit}}, - title = {Technical Advice Note 52 \& 53 -- Soil texture}, - institution = {Rural Development Service}, - year = {2006}, - month = {august}, - note = {6 p. \texttt{http://www.defra.gov.uk/environment/land/soil/information/publications.htm}}, - owner = {root}, - timestamp = {2009.08.22}, - url = {http://www.defra.gov.uk/environment/land/soil/information/publications.htm} -} - @MISC{DUCARME2009, author = {F. Ducarme and P. Defourny and Delvaux B. and Radoux J.}, title = {La texture du sol -- Triangle textural belge}, @@ -123,6 +71,17 @@ url = {http://www.icampus.ucl.ac.be/courses/MILA2230/document/texture.html} } + at MISC{GEOVLEX2009, + author = {{GEOVLEX, MLU Halle-Wittenberg}}, + title = {Glossardatenbank -- Bodenart}, + howpublished = {Website}, + year = {2009}, + note = {Last access 2009/08/24. \texttt{http://mars.geographie.uni-halle.de/mlucampus/geoglossar/terme\_datenblatt.php?terme=Bodenart}}, + owner = {root}, + timestamp = {2009.08.24}, + url = {http://mars.geographie.uni-halle.de/mlucampus/geoglossar/terme\_datenblatt.php?terme=Bodenart} +} + @MISC{HYPRES2009, author = {{European Soil Bureau working group "HYdraulic PRoperties of European Soils" (HYPRES)}}, @@ -136,38 +95,59 @@ url = {http://www.macaulay.ac.uk/hypres/hypressoil.html} } - at MANUAL{CHEMOMETRICSREF, - title = {chemometrics: Multivariate Statistical Analysis in Chemometrics}, - author = {P. Filzmoser and K. Varmuza}, - year = {2008}, - note = {R package version 0.4. \texttt{http://cran.r-project.org/web/packages/chemometrics/index.html}}, - url = {http://cran.r-project.org/web/packages/chemometrics/index.html} + at MASTERSTHESIS{LIDBERG2009, + author = {Linn?a Lidberg}, + title = {Texturbest?mning genom f?lt-, pipett- och hydrometermetoder}, + school = {SLU -- Institutionen f?r skoglig markl?ra (Department of Forest Soils)}, + year = {2009}, + type = {Examensarbete (MSc Soil Science and Environmental Studies)}, + address = {Uppsala, Sweden}, + note = {vol 20. 31 pp. \texttt{http://ex-epsilon.slu.se/archive/00003079/}}, + owner = {root}, + timestamp = {2009.09.05}, + url = {http://ex-epsilon.slu.se/archive/00003079/} } - at MISC{GEOVLEX2009, - author = {{GEOVLEX, MLU Halle-Wittenberg}}, - title = {Glossardatenbank -- Bodenart}, + at MANUAL{RDCT2009, + title = {R: A Language and Environment for Statistical Computing}, + author = {{R Development Core Team}}, + organization = {R Foundation for Statistical Computing}, + address = {Vienna, Austria}, + year = {2009}, + note = {{ISBN} 3-900051-07-0. \texttt{http://www.R-project.org}}, + url = {http://www.R-project.org} +} + + at MISC{SOLBRETAGNE2009, + author = {{Sols de Bretagne}}, + title = {Phototh?que -- Etude d'un sol -- Triangle des textures GEPPA}, howpublished = {Website}, year = {2009}, - note = {Last access 2009/08/24. \texttt{http://mars.geographie.uni-halle.de/mlucampus/geoglossar/terme\_datenblatt.php?terme=Bodenart}}, + note = {Last access 2009/08/24. \texttt{http://www.sols-de-bretagne.fr/index.php/component/option,com\_datsogallery/Itemid,79/func,detail/catid,2/id,66/}}, owner = {root}, timestamp = {2009.08.24}, - url = {http://mars.geographie.uni-halle.de/mlucampus/geoglossar/terme\_datenblatt.php?terme=Bodenart} + url = {http://www.sols-de-bretagne.fr/index.php/component/option,com\_datsogallery/Itemid,79/func,detail/catid,2/id,66/} } - at ARTICLE{GERAKIS1999SSSAJ, - author = {A. Gerakis and B. Baer}, - title = {A Computer Program for Soil Textural Classification}, - journal = {Soil Science Society of America Journal}, - year = {1999}, - volume = {63}, - pages = {807--808}, - note = {\texttt{http://nowlin.css.msu.edu/software/triangle\_form.html}}, + at MISC{WIKIPEDIADE2009, + author = {Anonymous}, + title = {Fingerprobe (Boden)}, + howpublished = {Website (Wikipedia.de)}, + year = {2009}, + note = {Last access 2009/08/24.\texttt{http://de.wikipedia.org/wiki/Fingerprobe\_\%28Boden\%29}}, owner = {root}, - timestamp = {2009.08.18}, - url = {http://soil.scijournals.org/cgi/content/abstract/63/4/807} + timestamp = {2009.08.24}, + url = {http://de.wikipedia.org/wiki/Fingerprobe\_\%28Boden\%29} } + at MANUAL{CHEMOMETRICSREF, + title = {chemometrics: Multivariate Statistical Analysis in Chemometrics}, + author = {P. Filzmoser and K. Varmuza}, + year = {2008}, + note = {R package version 0.4. \texttt{http://cran.r-project.org/web/packages/chemometrics/index.html}}, + url = {http://cran.r-project.org/web/packages/chemometrics/index.html} +} + @TECHREPORT{HOLBECHE2008, author = {Georgina Holbeche}, title = {Soilquality.org.au -- Physics -- Measuring soil texture in the laboratory}, @@ -182,17 +162,45 @@ url = {http://www.soilquality.org.au/documents/28/original/Phys\_-\_Measuring\_Soil\_Texture\_in\_the\_Lab\_web.pdf} } - at ARTICLE{JAMAGNE1967, - author = {M. Jamagne}, - title = {Bases et techniques d'une cartographie des sols}, - journal = {Annales Agronomiques}, - year = {1967}, - volume = {18 (hors s?rie)}, - pages = {142}, + at ARTICLE{RICHER2008EGS, + author = {A. {Richer de Forges} and C. Feller and M. Jamagne and D. Arrouays}, + title = {Perdus dans le triangle des textures}, + journal = {Etudes et Gestion des Sols}, + year = {2008}, + volume = {15}, + pages = {97--111}, + number = {2}, + note = {(en: Lost in the textures triangle)}, owner = {root}, - timestamp = {2009.08.24} + timestamp = {2009.08.18} } + at MISC{RICHER2008INRA, + author = {A. {Richer de Forges} and C. Feller and M. Jamagne and D. Arrouays}, + title = {Lost in the triangular diagrams of soil texture}, + howpublished = {Poster}, + year = {2008}, + note = {\texttt{http://www.prodinra.inra.fr/prodinra/pinra/data/2008/08/PROD2008387413ba\_20080819120904968.pdf}}, + owner = {root}, + timestamp = {2009.08.18}, + url = {http://www.prodinra.inra.fr/prodinra/pinra/data/2008/08/PROD2008387413ba\_20080819120904968.pdf} +} + + at ARTICLE{BORMANN2007, + author = {H. Bormann}, + title = {Analysis of the suitability of the German soil texture classification + for the regional scale application of physical based hydrological + model}, + journal = {Advances in Geosciences}, + year = {2007}, + volume = {11}, + pages = {7--13}, + note = {\texttt{www.adv-geosci.net/11/7/2007/}}, + owner = {root}, + timestamp = {2009.08.22}, + url = {www.adv-geosci.net/11/7/2007/} +} + @ARTICLE{LARK2007, author = {R. M. Lark and T. F. A. Bishop}, title = {Cokriging particle size fractions of the soil}, @@ -207,6 +215,60 @@ url = {http://www3.interscience.wiley.com/journal/118000728/abstract} } + at PHDTHESIS{MOEYS2007, + author = {Julien Moeys}, + title = {Variabilit? spatiale et d?terminismes agro?p?dologiques du devenir + d?un herbicide dans l?horizon de surface -- Application au cas de + l'isoproturon dans un secteur agricole de Beauce chartraine}, + school = {AgroParisTech}, + year = {2007}, + type = {Soil Science}, + address = {Paris, France}, + month = {December}, + note = {273 pp. + annexes. \texttt{http://pastel.paristech.org/4448/}}, + owner = {julienm}, + timestamp = {2009.09.01}, + url = {http://pastel.paristech.org/4448/} +} + + at TECHREPORT{DEFRA2006, + author = {{Defra -- Rural Development Service -- Technical Advice Unit}}, + title = {Technical Advice Note 52 \& 53 -- Soil texture}, + institution = {Rural Development Service}, + year = {2006}, + month = {august}, + note = {6 p. \texttt{http://www.defra.gov.uk/environment/land/soil/information/publications.htm}}, + owner = {root}, + timestamp = {2009.08.22}, + url = {http://www.defra.gov.uk/environment/land/soil/information/publications.htm} +} + + at ARTICLE{TEH2003CPSA, + author = {C.B.S. Teh and M.A. Rashid}, + title = {Object-Oriented Code to Lookup Soil Texture Classes for Any Soil + Classification Scheme}, + journal = {Communications in Soil Science and Plant Analysis}, + year = {2003}, + volume = {34}, + pages = {1--11}, + number = {1}, + note = {\texttt{http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a713624019\~{}tab=linking}}, + owner = {root}, + timestamp = {2009.08.18}, + url = {http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a713624019\~{}tab=linking} +} + + at BOOK{MASSREF, + title = {Modern Applied Statistics with S}, + publisher = {Springer}, + year = {2002}, + author = {W. N. Venables and B. D. Ripley}, + address = {New York}, + edition = {Fourth}, + note = {ISBN 0-387-95457-0. \texttt{http://www.stats.ox.ac.uk/pub/MASS4}}, + url = {http://www.stats.ox.ac.uk/pub/MASS4} +} + @INPROCEEDINGS{SWEAVE2002, author = {F. Leisch}, title = {Sweave: Dynamic Generation of Statistical Reports Using Literate @@ -220,19 +282,6 @@ url = {http://www.stat.uni-muenchen.de/\~{}leisch/Sweave} } - at MASTERSTHESIS{LIDBERG2009, - author = {Linn?a Lidberg}, - title = {Texturbest?mning genom f?lt-, pipett- och hydrometermetoder}, - school = {SLU -- Institutionen f?r skoglig markl?ra (Department of Forest Soils)}, - year = {2009}, - type = {Examensarbete (MSc Soil Science and Environmental Studies)}, - address = {Uppsala, Sweden}, - note = {vol 20. 31 pp. \texttt{http://ex-epsilon.slu.se/archive/00003079/}}, - owner = {root}, - timestamp = {2009.09.05}, - url = {http://ex-epsilon.slu.se/archive/00003079/} -} - @ARTICLE{LIEBENS2001CPSA, author = {J. Liebens}, title = {Spreadsheet macro to determine usda soil textural subclasses}, @@ -261,20 +310,17 @@ url = {http://www.publish.csiro.au/nid/84/paper/SR00065.htm} } - at PHDTHESIS{MOEYS2007, - author = {Julien Moeys}, - title = {Variabilit? spatiale et d?terminismes agro?p?dologiques du devenir - d?un herbicide dans l?horizon de surface -- Application au cas de - l'isoproturon dans un secteur agricole de Beauce chartraine}, - school = {AgroParisTech}, - year = {2007}, - type = {Soil Science}, - address = {Paris, France}, - month = {December}, - note = {273 pp. + annexes. \texttt{http://pastel.paristech.org/4448/}}, - owner = {julienm}, - timestamp = {2009.09.01}, - url = {http://pastel.paristech.org/4448/} + at ARTICLE{GERAKIS1999SSSAJ, + author = {A. Gerakis and B. Baer}, + title = {A Computer Program for Soil Textural Classification}, + journal = {Soil Science Society of America Journal}, + year = {1999}, + volume = {63}, + pages = {807--808}, + note = {\texttt{http://nowlin.css.msu.edu/software/triangle\_form.html}}, + owner = {root}, + timestamp = {2009.08.18}, + url = {http://soil.scijournals.org/cgi/content/abstract/63/4/807} } @ARTICLE{NEMES1999GEOD, @@ -291,40 +337,32 @@ url = {http://dx.doi.org/10.1016/S0016-7061(99)00014-2} } - at MANUAL{RDCT2009, - title = {R: A Language and Environment for Statistical Computing}, - author = {{R Development Core Team}}, - organization = {R Foundation for Statistical Computing}, - address = {Vienna, Austria}, - year = {2009}, - note = {{ISBN} 3-900051-07-0. \texttt{http://www.R-project.org}}, - url = {http://www.R-project.org} + at ARTICLE{TEH1996, + author = {T.B.S. Christopher and A.M. Mokhtaruddin}, + title = {A computer program to determine the soil textural class in 1-2-3 + for windows and excel}, + journal = {Communications in Soil Science and Plant Analysis}, + year = {1996}, + volume = {27}, + pages = {2315--2319}, + number = {9 and 10}, + note = {\texttt{http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a905339412\~{}tab=linking}}, + owner = {julienm}, + timestamp = {2009.08.19}, + url = {http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a905339412\~{}tab=linking} } - at ARTICLE{RICHER2008EGS, - author = {A. {Richer de Forges} and C. Feller and M. Jamagne and D. Arrouays}, - title = {Perdus dans le triangle des textures}, - journal = {Etudes et Gestion des Sols}, - year = {2008}, - volume = {15}, - pages = {97--111}, - number = {2}, - note = {(en: Lost in the textures triangle)}, + at BOOK{BAIZE1995, + title = {Guide pour la description des sols}, + publisher = {INRA}, + year = {1995}, + author = {D. Baize and B. Jabiol}, + series = {col. Techniques et pratiques.}, + note = {375 p.}, owner = {root}, - timestamp = {2009.08.18} + timestamp = {2009.08.24} } - at MISC{RICHER2008INRA, - author = {A. {Richer de Forges} and C. Feller and M. Jamagne and D. Arrouays}, - title = {Lost in the triangular diagrams of soil texture}, - howpublished = {Poster}, - year = {2008}, - note = {\texttt{http://www.prodinra.inra.fr/prodinra/pinra/data/2008/08/PROD2008387413ba\_20080819120904968.pdf}}, - owner = {root}, - timestamp = {2009.08.18}, - url = {http://www.prodinra.inra.fr/prodinra/pinra/data/2008/08/PROD2008387413ba\_20080819120904968.pdf} -} - @INBOOK{USDA1993, chapter = {3}, title = {Soil survey manual}, @@ -338,55 +376,15 @@ url = {http://soils.usda.gov/technical/manual/print\_version/chapter3.html} } - at MISC{SOLBRETAGNE2009, - author = {{Sols de Bretagne}}, - title = {Phototh?que -- Etude d'un sol -- Triangle des textures GEPPA}, - howpublished = {Website}, - year = {2009}, - note = {Last access 2009/08/24. \texttt{http://www.sols-de-bretagne.fr/index.php/component/option,com\_datsogallery/Itemid,79/func,detail/catid,2/id,66/}}, - owner = {root}, - timestamp = {2009.08.24}, - url = {http://www.sols-de-bretagne.fr/index.php/component/option,com\_datsogallery/Itemid,79/func,detail/catid,2/id,66/} + at TECHREPORT{TGL1985, + author = {{TGL 24300-05\_1985-06}}, + title = {Aufnahme landwirtschaftlich genutzter Standorte - K\"{o}rnungsarten + und Skelettgehalt}, + institution = {Bauhaus-Universit\"{a}t, Weimar}, + year = {1985}, + timestamp = {2011.11.15} } - at ARTICLE{TEH2003CPSA, - author = {C.B.S. Teh and M.A. Rashid}, - title = {Object-Oriented Code to Lookup Soil Texture Classes for Any Soil - Classification Scheme}, - journal = {Communications in Soil Science and Plant Analysis}, - year = {2003}, - volume = {34}, - pages = {1--11}, - number = {1}, - note = {\texttt{http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a713624019\~{}tab=linking}}, - owner = {root}, - timestamp = {2009.08.18}, - url = {http://www.informaworld.com/smpp/content\~{}db=all\~{}content=a713624019\~{}tab=linking} -} - - at MISC{BOSSUYT2009, - author = {Bart {Van Bossuyt}}, - title = {De Belgische Textuurdriehoek}, - howpublished = {website}, - month = {last checked 2009/10/14}, - year = {2009}, - note = {\texttt{http://www.begeleidzelfstandigleren.com/aardrijkskunde/losse\_animaties/textuurdriehoek\_bodems.html}}, - owner = {root}, - timestamp = {2009.10.14}, - url = {http://www.begeleidzelfstandigleren.com/aardrijkskunde/losse\_animaties/textuurdriehoek\_bodems.html} -} - - at BOOK{MASSREF, - title = {Modern Applied Statistics with S}, - publisher = {Springer}, - year = {2002}, - author = {W. N. Venables and B. D. Ripley}, - address = {New York}, - edition = {Fourth}, - note = {ISBN 0-387-95457-0. \texttt{http://www.stats.ox.ac.uk/pub/MASS4}}, - url = {http://www.stats.ox.ac.uk/pub/MASS4} -} - @ARTICLE{VERHEYE1984PEDO, author = {W. Verheye and J. Ameryckx}, title = {Mineral fractions and classificaton of soil texture.}, @@ -403,19 +401,28 @@ title = {Standortserkundungsanweisung SEA74 - A/B}, institution = {VEB FORSTPROJEKTIERUNG POTSDAM}, year = {1974}, - month = {}, - note = {}, - timestamp = {2011.11.15} + timestamp = {2011.11.15} } - at TECHREPORT{TGL1985, - author = {{TGL 24300-05\_1985-06}}, - title = {Aufnahme landwirtschaftlich genutzter Standorte - K\"{o}rnungsarten und Skelettgehalt}, - institution = {Bauhaus-Universit\"{a}t, Weimar}, - year = {1985}, - month = {}, - note = {}, - timestamp = {2011.11.15} + at ARTICLE{JAMAGNE1967, + author = {M. Jamagne}, + title = {Bases et techniques d'une cartographie des sols}, + journal = {Annales Agronomiques}, + year = {1967}, + volume = {18 (hors s?rie)}, + pages = {142}, + owner = {root}, + timestamp = {2009.08.24} } + at ARTICLE{WHITNEY1911, + author = {M. Whitney}, + title = {The use of soils east of the Great Plains region}, + journal = {United States Department of Agriculture Bureau Soils Bulletin}, + year = {1911}, + volume = {78}, + institution = {United States Department of Agriculture Bureau}, + owner = {julienm}, + timestamp = {2014.04.23} +} Modified: soiltexture_2_RCMDcheck_noexamples.bat =================================================================== --- soiltexture_2_RCMDcheck_noexamples.bat 2014-04-17 14:31:03 UTC (rev 104) +++ soiltexture_2_RCMDcheck_noexamples.bat 2014-04-23 13:50:06 UTC (rev 105) @@ -2,7 +2,7 @@ cd /D "%rPackagesDir%\%pkgname%\pkg" -R CMD check --no-examples --as-cran %pkgname%_1.2.13.tar.gz +R CMD check --no-examples --as-cran %pkgname%_1.2.14.tar.gz @REM --as-cran Modified: soiltexture_3_RCMDINSTALL_build.BAT =================================================================== --- soiltexture_3_RCMDINSTALL_build.BAT 2014-04-17 14:31:03 UTC (rev 104) +++ soiltexture_3_RCMDINSTALL_build.BAT 2014-04-23 13:50:06 UTC (rev 105) @@ -2,6 +2,6 @@ cd /D "%rPackagesDir%\%pkgname%\pkg" -R CMD INSTALL --build --compile-both --compact-docs --byte-compile %pkgname%_1.2.13.tar.gz +R CMD INSTALL --build --compile-both --compact-docs --byte-compile %pkgname%_1.2.14.tar.gz pause Modified: soiltexture_compile.R =================================================================== --- soiltexture_compile.R 2014-04-17 14:31:03 UTC (rev 104) +++ soiltexture_compile.R 2014-04-23 13:50:06 UTC (rev 105) @@ -18,8 +18,8 @@ pkgDescription( pkgName = pkgName, pkgDir = pkgDir, - pkgVersion = "1.2.13", - pkgDepends = c("sp","MASS"), + pkgVersion = "1.2.14", + pkgDepends = c( "sp","MASS" ), pkgSuggests = "xtable", # c("drc","plotrix"), RVersion = NULL )