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<p style="margin-top:0;margin-bottom:0">Dear Simon and Jean,</p>
<p style="margin-top:0;margin-bottom:0"><br>
</p>
<p style="margin-top:0;margin-bottom:0">Thanks very much for your very quick reply.
<br>
</p>
<p style="margin-top:0;margin-bottom:0">I started my function and it is all good now on my side as well I can access the server!</p>
<p style="margin-top:0;margin-bottom:0">Thanks again for your help!</p>
<p style="margin-top:0;margin-bottom:0">Best,<br>
</p>
<p style="margin-top:0;margin-bottom:0">David<br>
</p>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Jean Lobry <jean.lobry@univ-lyon1.fr><br>
<b>Sent:</b> Wednesday, December 13, 2017 7:46:56 AM<br>
<b>To:</b> Simon Penel; seqinr-forum@lists.r-forge.r-project.org; Eme, David<br>
<b>Subject:</b> Re: [Seqinr-forum] pbil.univ-lyon1.fr:5558 cannot be opened</font>
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<div class="PlainText">Dear Super-Simon,<br>
<br>
many thanks for handling this. Everything seems OK on my<br>
side but I'm very far away from New Zealand !<br>
<br>
@David : is it OK for you now ?<br>
<br>
Best,<br>
<br>
JLO<br>
<br>
Le 12/12/2017 à 11:42, Simon Penel a écrit :<br>
> Hello,<br>
> <br>
> the seqinr server is running now.<br>
> Let me know if you encounter any trouble...<br>
> <br>
> all the best<br>
> Simon<br>
> <br>
> <br>
> Le 12/12/2017 à 10:19, Simon Penel a écrit :<br>
>> Hello,<br>
>><br>
>> the seqinr server is currently down for maintenance, it will be <br>
>> restarted later today.<br>
>> We are sorry for the inconvenience it is causing you.<br>
>><br>
>> all the best<br>
>><br>
>> Simon<br>
>><br>
>><br>
>><br>
>><br>
>> Le 12/12/2017 à 09:56, Eme, David a écrit :<br>
>>><br>
>>> Dear seqinr user,<br>
>>><br>
>>><br>
>>> I used to extract sequences using seqinr functions regularly but <br>
>>> today I received the following message when choosing the bank:<br>
>>><br>
>>> choosebank("Genbank", verbose="TRUE")<br>
>>><br>
>>> Error in socketConnection(host = host, port = port, server = server, <br>
>>> blocking = blocking, :<br>
>>> cannot open the connection<br>
>>> In addition: Warning message:<br>
>>> In socketConnection(host = host, port = port, server = server, <br>
>>> blocking = blocking, :<br>
>>> pbil.univ-lyon1.fr:5558 cannot be opened<br>
>>> Error in choosebank("genbank") :<br>
>>> I wasn't able to open the socket connection:<br>
>>> o Check that your are connected to the internet.<br>
>>> o Check that port 5558 is not closed by a firewall.<br>
>>> o Try to increase timeout value (current is 5 seconds).<br>
>>><br>
>>> Here my sessionInfo()<br>
>>> R version 3.2.0 (2015-04-16)<br>
>>> Platform: i386-w64-mingw32/i386 (32-bit)<br>
>>> Running under: Windows 7 (build 7601) Service Pack 1<br>
>>><br>
>>> locale:<br>
>>> [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 <br>
>>> LC_MONETARY=French_France.1252<br>
>>> [4] LC_NUMERIC=C LC_TIME=French_France.1252<br>
>>><br>
>>> attached base packages:<br>
>>> [1] stats graphics grDevices utils datasets methods base<br>
>>><br>
>>> other attached packages:<br>
>>> [1] seqinr_3.3-6<br>
>>><br>
>>> loaded via a namespace (and not attached):<br>
>>> [1] tools_3.2.0 ade4_1.7-2<br>
>>><br>
>>><br>
>>> So I think the problem come from the server, in addition I also tried <br>
>>> to access seqinr R web page <br>
>>> (<a href="http://pbil.univ-lyon1.fr/software/SeqinR">http://pbil.univ-lyon1.fr/software/SeqinR</a>) but I got the following
<br>
>>> message:<br>
>>><br>
>>><br>
>>> Ce site est inaccessible<br>
>>><br>
>>> *pbil.univ-lyon1.fr* n'autorise pas la connexion.<br>
>>><br>
>>> * Accédez à <a href="http://www.univ-lyon1.fr/">http://www.univ-lyon1.fr/</a><br>
>>> * Effectuez une recherche Google sur pbil univ lyon1 fr software<br>
>>> SeqinR<br>
>>> <<a href="https://www.google.co.nz/search?q=pbil%20univ%20lyon1%20fr%20software%20SeqinR">https://www.google.co.nz/search?q=pbil%20univ%20lyon1%20fr%20software%20SeqinR</a>>.
<br>
>>><br>
>>><br>
>>> ERR_CONNECTION_REFUSED<br>
>>><br>
>>><br>
>>> So it seems that the problem comes from the server that refuse the <br>
>>> connection, but why?<br>
>>><br>
>>><br>
>>> For information, I'm based in New Zealand.<br>
>>><br>
>>><br>
>>> Thanks very much in advance!<br>
>>><br>
>>><br>
>>> David<br>
>>><br>
>>><br>
>>><br>
>>> _______________________________________________<br>
>>> Seqinr-forum mailing list<br>
>>> Seqinr-forum@lists.r-forge.r-project.org<br>
>>> <a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/seqinr-forum">
https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/seqinr-forum</a> <br>
>>><br>
>><br>
>><br>
> <br>
<br>
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