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<p style="margin-top:0;margin-bottom:0">Dear seqinr user,</p>
<p style="margin-top:0;margin-bottom:0"><br>
</p>
<p style="margin-top:0;margin-bottom:0">I used to extract sequences using seqinr functions regularly but today I received the following message when choosing the bank:</p>
<p style="margin-top:0;margin-bottom:0"></p>
<div>choosebank("Genbank", verbose="TRUE")</div>
<div><br>
</div>
<p></p>
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<div>Error in socketConnection(host = host, port = port, server = server, blocking = blocking, : </div>
<div> cannot open the connection</div>
<div>In addition: Warning message:</div>
<div>In socketConnection(host = host, port = port, server = server, blocking = blocking, :</div>
<div> pbil.univ-lyon1.fr:5558 cannot be opened</div>
<div>Error in choosebank("genbank") : </div>
<div> I wasn't able to open the socket connection:</div>
<div> o Check that your are connected to the internet.</div>
<div> o Check that port 5558 is not closed by a firewall.</div>
<div> o Try to increase timeout value (current is 5 seconds).</div>
<div><br>
</div>
<div>Here my sessionInfo()</div>
<div>
<div>R version 3.2.0 (2015-04-16)</div>
<div>Platform: i386-w64-mingw32/i386 (32-bit)</div>
<div>Running under: Windows 7 (build 7601) Service Pack 1</div>
<div><br>
</div>
<div>locale:</div>
<div>[1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 LC_MONETARY=French_France.1252</div>
<div>[4] LC_NUMERIC=C LC_TIME=French_France.1252 </div>
<div><br>
</div>
<div>attached base packages:</div>
<div>[1] stats graphics grDevices utils datasets methods base </div>
<div><br>
</div>
<div>other attached packages:</div>
<div>[1] seqinr_3.3-6</div>
<div><br>
</div>
<div>loaded via a namespace (and not attached):</div>
<div>[1] tools_3.2.0 ade4_1.7-2 </div>
<br>
</div>
<div><br>
</div>
So I think the problem come from the server, in addition I also tried to access seqinr R web page (<a href="http://pbil.univ-lyon1.fr/software/SeqinR" class="OWAAutoLink" id="LPlnk583183" previewremoved="true" tabindex="-1" disabled="true">http://pbil.univ-lyon1.fr/software/SeqinR</a>)
but I got the following message:
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<h1 jsselect="heading" jsvalues=".innerHTML:msg" jstcache="5" style="color: rgb(51, 51, 51); font-size: 1.6em; font-weight: normal; line-height: 1.25em; margin-bottom: 16px; margin-top: 0px; word-wrap: break-word; font-family: "Segoe UI", Tahoma, sans-serif; background-color: rgb(247, 247, 247);">
Ce site est inaccessible</h1>
<p jsselect="summary" jsvalues=".innerHTML:msg" jstcache="2" style="display: inline; color: rgb(100, 100, 100); font-family: "Segoe UI", Tahoma, sans-serif; font-size: 15px; background-color: rgb(247, 247, 247);">
<strong jscontent="hostName" jstcache="16" style="overflow-wrap: break-word;">pbil.univ-lyon1.fr</strong> n'autorise pas la connexion.</p>
<span style="color: rgb(100, 100, 100); font-family: "Segoe UI", Tahoma, sans-serif; font-size: 15px; background-color: rgb(247, 247, 247);"></span>
<div id="suggestions-list" jsdisplay="(suggestionsSummaryList && suggestionsSummaryList.length)" jstcache="6" style="color: rgb(100, 100, 100); font-family: "Segoe UI", Tahoma, sans-serif; font-size: 15px; background-color: rgb(247, 247, 247);">
<p jsvalues=".innerHTML:suggestionsSummaryListHeader" jstcache="13" style="-webkit-margin-after: 0px;">
</p>
<ul jsvalues=".className:suggestionsSummaryList.length == 1 ? 'single-suggestion' : ''" jstcache="14" class="" style="margin-top: 0px;">
<li jsselect="suggestionsSummaryList" jsvalues=".innerHTML:summary" jstcache="15" jsinstance="0">
Accédez à <a jsvalues="href:urlCorrection;.jstdata:$this" jscontent="urlCorrectionForDisplay" jstcache="17" href="http://www.univ-lyon1.fr/" style="color: rgb(17, 85, 204); text-decoration-line: none;" id="LPlnk484699" previewremoved="true" tabindex="-1" disabled="true">http://www.univ-lyon1.fr/</a></li><li jsselect="suggestionsSummaryList" jsvalues=".innerHTML:summary" jstcache="15" jsinstance="*1">
Effectuez une recherche Google sur <a jsvalues="href:searchUrl;.jstdata:$this" jscontent="searchTerms" id="search-link" jstcache="18" href="https://www.google.co.nz/search?q=pbil%20univ%20lyon1%20fr%20software%20SeqinR" style="color: rgb(17, 85, 204); text-decoration-line: none;" tabindex="-1" disabled="true">pbil
univ lyon1 fr software SeqinR</a>.</li></ul>
</div>
<div class="error-code" jscontent="errorCode" jstcache="7" style="color: rgb(100, 100, 100); font-size: 0.8em; text-transform: uppercase; font-family: "Segoe UI", Tahoma, sans-serif; background-color: rgb(247, 247, 247);">
ERR_CONNECTION_REFUSED</div>
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</p>
So it seems that the problem comes from the server that refuse the connection, but why?
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</p>
<p style="margin-top:0;margin-bottom:0">For information, I'm based in New Zealand.</p>
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</p>
<p style="margin-top:0;margin-bottom:0">Thanks very much in advance!</p>
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</p>
<p style="margin-top:0;margin-bottom:0">David</p>
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