[Seqinr-commits] r1997 - pkg/man

[noreply at r-forge.r-project.org]

Author: jeanlobry
Date: 2016-10-05 19:39:30 +0200 (Wed, 05 Oct 2016)
New Revision: 1997

Modified:
   pkg/man/SEQINR.UTIL.Rd
Log:
three more genetic codes

Modified: pkg/man/SEQINR.UTIL.Rd
===================================================================
--- pkg/man/SEQINR.UTIL.Rd	2016-10-05 17:34:04 UTC (rev 1996)
+++ pkg/man/SEQINR.UTIL.Rd	2016-10-05 17:39:30 UTC (rev 1997)
@@ -3,7 +3,7 @@
 \docType{data}
 \title{utility data for seqinr}
 \description{
-  This data set gives the genetics code, the name of each codon, the IUPAC one-letter code for aminoacids and the physico-chemical class of amino acid and the pK values of amino acids described in  Bjellqvist \emph{et al.} (1993).
+  This data set gives the genetics code, the name of each codon, the IUPAC one-letter code for aminoacids and the physico-chemical class of amino acid and the pK values of amino acids described in Bjellqvist \emph{et al.} (1993).
 }
 \format{
  	\code{SEQINR.UTIL} is a list containing the 4 following objects:  
@@ -15,7 +15,7 @@
   }
 }
 \source{
-  Data prepared by D.Charif.\cr The genetic codes have been taken from the ncbi taxonomy database: \url{http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi?mode=c }. Last update October 05, 2000.\cr The IUPAC one-letter code for aminoacids is descibed at: \url{http://www.chem.qmul.ac.uk/iupac/AminoAcid/ }. 
+Data prepared by D. Charif.\cr The genetic codes have been taken from the ncbi  database: \url{https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi}. Last visited on 2016-10-05 corresponding to last update of the Genetic Codes: April 30, 2013.\cr The IUPAC one-letter code for aminoacids is descibed at: \url{http://www.chem.qmul.ac.uk/iupac/AminoAcid/}. 
  pK values of amino acids were taken from Bjellqvist et al.\cr 
 Bjellqvist, B.,Hughes, G.J., Pasquali, Ch., Paquet, N., Ravier, F., Sanchez, J.-Ch., Frutiger, S. & Hochstrasser, D.F.(1993)  The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences.\emph{ Electrophoresis}, \bold{14}, 1023-1031. 
 }